Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00557 ATGGCGCCTTATTATATTAGAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATCAGCGATGAATGCTTGATTGAAATGGTTAAGAAGGAAACCCATCACTTGCCTCTTGATGGGTACCTCGGGAAGTTCCACAACGGCGACTTGGATGTCCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTATTGGTCTTGATTCGATGATTTTCGAAGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAACTACTTGGATCGCTTCCTTTCTGCTTATGATCTACCCAAAGGCAAAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCGTTGGATTTACAGGTGGGTGGATCGAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACACCTTTCTCATTTATCGATCATTACCTCCGAAAGATCCACGACGACGAATTATCTCTCGAAATGTCAATCGGGCAATCCAGTCATCTACTCTTGAACATAATACATGGTGCTATTTCGTTCTTGGACGTAATCGTTGTTGTGTCGATGAGTATCGAGTTCTTGGAATTCAAACCGTCGGAGATTGCAGCAGCTGTGGCGATATCGGTCGCGGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAGCTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACACGTTCGTCTGCCGGGGTGGGTCGGGGAAGGGCTCGAGTGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCGGGGTGTTGGAGGTGACATGCTTGAGCTATACAAGCAATGATACAGCAGTTGGGTCATGTGCTAACTCAGATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGA 1023 46.82 MAPYYIRTHRNRSHRRGASDGLPFISDECLIEMVKKETHHLPLDGYLGKFHNGDLDVRARTEAVDWIKKVSIGLDSMIFEVSTHFRFGPLCIYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHDDELSLEMSIGQSSHLLLNIIHGAISFLDVIVVVSMSIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDTFVCRGGSGKGSSASMSSERRSPSGVLEVTCLSYTSNDTAVGSCANSDATKRRRLNRPCEVNF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2692406 2694060 - CmoCh05G005570.1 Cmo05g00557 382692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00557 340 Pfam Cyclin, C-terminal domain 173 279 IPR004367 -
Cmo05g00557 340 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 14 331 - -
Cmo05g00557 340 SMART Cyclin_C_2 173 312 IPR004367 -
Cmo05g00557 340 SMART cyclin_7 76 164 IPR013763 -
Cmo05g00557 340 Pfam Cyclin, N-terminal domain 33 170 IPR006671 -
Cmo05g00557 340 SUPERFAMILY Cyclin-like 156 279 IPR036915 -
Cmo05g00557 340 PANTHER CYCLINS 14 331 IPR039361 -
Cmo05g00557 340 SUPERFAMILY Cyclin-like 24 170 IPR036915 -
Cmo05g00557 340 Gene3D - 32 272 - -
Cmo05g00557 340 Gene3D - 43 171 - -
Cmo05g00557 340 CDD CYCLIN 78 163 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00557 Cmo-Chr5:2692406 Cmo05g00921 Cmo-Chr5:7189219 9.56E-51 dispersed
Cmo12g00169 Cmo-Chr12:1117393 Cmo05g00557 Cmo-Chr5:2692406 3.62E-134 wgd
Cmo03g00875 Cmo-Chr3:6824498 Cmo05g00557 Cmo-Chr5:2692406 4.90E-78 wgd
Cmo05g00557 Cmo-Chr5:2692406 Cmo07g00571 Cmo-Chr7:2567021 2.11E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00557 K18810 - csv:101216206 476.092