Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00557 | ATGGCGCCTTATTATATTAGAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATCAGCGATGAATGCTTGATTGAAATGGTTAAGAAGGAAACCCATCACTTGCCTCTTGATGGGTACCTCGGGAAGTTCCACAACGGCGACTTGGATGTCCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTATTGGTCTTGATTCGATGATTTTCGAAGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAACTACTTGGATCGCTTCCTTTCTGCTTATGATCTACCCAAAGGCAAAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCGTTGGATTTACAGGTGGGTGGATCGAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACACCTTTCTCATTTATCGATCATTACCTCCGAAAGATCCACGACGACGAATTATCTCTCGAAATGTCAATCGGGCAATCCAGTCATCTACTCTTGAACATAATACATGGTGCTATTTCGTTCTTGGACGTAATCGTTGTTGTGTCGATGAGTATCGAGTTCTTGGAATTCAAACCGTCGGAGATTGCAGCAGCTGTGGCGATATCGGTCGCGGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAGCTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACACGTTCGTCTGCCGGGGTGGGTCGGGGAAGGGCTCGAGTGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCGGGGTGTTGGAGGTGACATGCTTGAGCTATACAAGCAATGATACAGCAGTTGGGTCATGTGCTAACTCAGATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGA | 1023 | 46.82 | MAPYYIRTHRNRSHRRGASDGLPFISDECLIEMVKKETHHLPLDGYLGKFHNGDLDVRARTEAVDWIKKVSIGLDSMIFEVSTHFRFGPLCIYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHDDELSLEMSIGQSSHLLLNIIHGAISFLDVIVVVSMSIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDTFVCRGGSGKGSSASMSSERRSPSGVLEVTCLSYTSNDTAVGSCANSDATKRRRLNRPCEVNF | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2692406 | 2694060 | - | CmoCh05G005570.1 | Cmo05g00557 | 382692 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00557 | 340 | Pfam | Cyclin, C-terminal domain | 173 | 279 | IPR004367 | - | |
Cmo05g00557 | 340 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 14 | 331 | - | - | |
Cmo05g00557 | 340 | SMART | Cyclin_C_2 | 173 | 312 | IPR004367 | - | |
Cmo05g00557 | 340 | SMART | cyclin_7 | 76 | 164 | IPR013763 | - | |
Cmo05g00557 | 340 | Pfam | Cyclin, N-terminal domain | 33 | 170 | IPR006671 | - | |
Cmo05g00557 | 340 | SUPERFAMILY | Cyclin-like | 156 | 279 | IPR036915 | - | |
Cmo05g00557 | 340 | PANTHER | CYCLINS | 14 | 331 | IPR039361 | - | |
Cmo05g00557 | 340 | SUPERFAMILY | Cyclin-like | 24 | 170 | IPR036915 | - | |
Cmo05g00557 | 340 | Gene3D | - | 32 | 272 | - | - | |
Cmo05g00557 | 340 | Gene3D | - | 43 | 171 | - | - | |
Cmo05g00557 | 340 | CDD | CYCLIN | 78 | 163 | IPR013763 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00557 | Cmo-Chr5:2692406 | Cmo05g00921 | Cmo-Chr5:7189219 | 9.56E-51 | dispersed | |
Cmo12g00169 | Cmo-Chr12:1117393 | Cmo05g00557 | Cmo-Chr5:2692406 | 3.62E-134 | wgd | |
Cmo03g00875 | Cmo-Chr3:6824498 | Cmo05g00557 | Cmo-Chr5:2692406 | 4.90E-78 | wgd | |
Cmo05g00557 | Cmo-Chr5:2692406 | Cmo07g00571 | Cmo-Chr7:2567021 | 2.11E-86 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00557 | K18810 | - | csv:101216206 | 476.092 |