Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00561 | ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTACCATACGATGATAACAACAGGGGTATGTTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGCGTTAGCGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAGTCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCGAAGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG | 1059 | 48.16 | MAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGDVMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMFDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSSPSLDPVEEDINETTVELTNSLPKQIANHSTNGDEQEPLIELANPSDTDIDIPTNFD | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2750666 | 2759563 | - | CmoCh05G005610.1 | Cmo05g00561 | 382696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00561 | 352 | MobiDBLite | consensus disorder prediction | 274 | 352 | - | - | |
Cmo05g00561 | 352 | Pfam | GATA zinc finger | 204 | 240 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00561 | 352 | SMART | GATA_3 | 198 | 251 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00561 | 352 | Gene3D | - | 196 | 254 | IPR013088 | GO:0006355|GO:0008270 | |
Cmo05g00561 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 352 | IPR045280 | GO:0006355 | |
Cmo05g00561 | 352 | MobiDBLite | consensus disorder prediction | 288 | 332 | - | - | |
Cmo05g00561 | 352 | ProSiteProfiles | CCT domain profile. | 133 | 175 | IPR010402 | GO:0005515 | |
Cmo05g00561 | 352 | ProSitePatterns | GATA-type zinc finger domain. | 204 | 231 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00561 | 352 | CDD | ZnF_GATA | 203 | 247 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00561 | 352 | ProSiteProfiles | Tify domain profile. | 65 | 100 | IPR010399 | - | |
Cmo05g00561 | 352 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 248 | - | - | |
Cmo05g00561 | 352 | ProSiteProfiles | GATA-type zinc finger domain profile. | 198 | 246 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00561 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 1 | 352 | - | - | |
Cmo05g00561 | 352 | SMART | tify_2 | 65 | 100 | IPR010399 | - | |
Cmo05g00561 | 352 | Pfam | tify domain | 68 | 99 | IPR010399 | - | |
Cmo05g00561 | 352 | Pfam | CCT motif | 133 | 174 | IPR010402 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00561 | Cmo-Chr5:2750666 | Cmo11g01455 | Cmo-Chr11:10243116 | 5.24E-68 | dispersed | |
Cmo05g00561 | Cmo-Chr5:2750666 | Cmo05g00563 | Cmo-Chr5:2759604 | 8.10E-64 | proximal | |
Cmo12g00161 | Cmo-Chr12:1036433 | Cmo05g00561 | Cmo-Chr5:2750666 | 4.79E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9822 | PF06203 | CCT | 1.30E-13 | CL0281 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00561 | - | - | csv:101214596 | 630.943 |