Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00561 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTACCATACGATGATAACAACAGGGGTATGTTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGCGTTAGCGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAGTCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCGAAGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 48.16 MAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGDVMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMFDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSSPSLDPVEEDINETTVELTNSLPKQIANHSTNGDEQEPLIELANPSDTDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2750666 2759563 - CmoCh05G005610.1 Cmo05g00561 382696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00561 352 MobiDBLite consensus disorder prediction 274 352 - -
Cmo05g00561 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Cmo05g00561 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 352 IPR045280 GO:0006355
Cmo05g00561 352 MobiDBLite consensus disorder prediction 288 332 - -
Cmo05g00561 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Cmo05g00561 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Cmo05g00561 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 248 - -
Cmo05g00561 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 352 - -
Cmo05g00561 352 SMART tify_2 65 100 IPR010399 -
Cmo05g00561 352 Pfam tify domain 68 99 IPR010399 -
Cmo05g00561 352 Pfam CCT motif 133 174 IPR010402 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00561 Cmo-Chr5:2750666 Cmo11g01455 Cmo-Chr11:10243116 5.24E-68 dispersed
Cmo05g00561 Cmo-Chr5:2750666 Cmo05g00563 Cmo-Chr5:2759604 8.10E-64 proximal
Cmo12g00161 Cmo-Chr12:1036433 Cmo05g00561 Cmo-Chr5:2750666 4.79E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9822 PF06203 CCT 1.30E-13 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00561 - - csv:101214596 630.943