Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00561 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTACCATACGATGATAACAACAGGGGTATGTTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGCGTTAGCGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAGTCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCGAAGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 48.16 MAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGDVMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMFDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSSPSLDPVEEDINETTVELTNSLPKQIANHSTNGDEQEPLIELANPSDTDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2750666 2759563 - CmoCh05G005610.1 Cmo05g00561 382696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00561 352 MobiDBLite consensus disorder prediction 274 352 - -
Cmo05g00561 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Cmo05g00561 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 352 IPR045280 GO:0006355
Cmo05g00561 352 MobiDBLite consensus disorder prediction 288 332 - -
Cmo05g00561 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Cmo05g00561 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Cmo05g00561 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 248 - -
Cmo05g00561 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Cmo05g00561 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 352 - -
Cmo05g00561 352 SMART tify_2 65 100 IPR010399 -
Cmo05g00561 352 Pfam tify domain 68 99 IPR010399 -
Cmo05g00561 352 Pfam CCT motif 133 174 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00561 - - - csv:101214596 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00561 Cmo-Chr5:2750666 Cmo11g01455 Cmo-Chr11:10243116 5.24E-68 dispersed
Cmo05g00561 Cmo-Chr5:2750666 Cmo05g00563 Cmo-Chr5:2759604 8.10E-64 proximal
Cmo12g00161 Cmo-Chr12:1036433 Cmo05g00561 Cmo-Chr5:2750666 4.79E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo17g00201 CST 1 180 Tify Gene Family AT4G14713 52.1 4.7e-45 178.7
Cmo08g01098 CST 1 180 Tify Gene Family AT4G14713 52.1 1.4e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9822 PF06203 CCT 1.30E-13 CL0281 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00561 Cmo_Chr05 FPKM 3.037736 5.274563 4.257228 4.449419 7.602081 6.282619 9.699566 9.535718 9.654134 10.128508