Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00563 ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACTCCCGACTGCGGCGACACCGGCGAGGCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGCGATGGTTCAAGCCAGCTCACTCTTTCCTTCCGTGGCCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTAGGTGGCTGCGAACTATCTTCGGGTCAGCCAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACATCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCTTGCGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGTCTCTCCAAGGAACCACAAGGGCACATCTAGCAAATCCATTAACCATTTCTGCCTGGGTTTTCGGAATTTTGTGGAACCCATGAAGCTGATTGATGGTTAG 960 50.42 MYGRAEPLTMGDQIASTPDCGDTGEALDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQPSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCESDAAKDFDCRRGNHAPSNLVSFPNVSPRNHKGTSSKSINHFCLGFRNFVEPMKLIDG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2759604 2767115 - CmoCh05G005630.1 Cmo05g00563 382698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00563 319 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cmo05g00563 319 Gene3D - 202 252 IPR013088 GO:0006355|GO:0008270
Cmo05g00563 319 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Cmo05g00563 319 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cmo05g00563 319 MobiDBLite consensus disorder prediction 187 201 - -
Cmo05g00563 319 Pfam tify domain 73 105 IPR010399 -
Cmo05g00563 319 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cmo05g00563 319 PANTHER GATA TRANSCRIPTION FACTOR 28 25 272 IPR045280 GO:0006355
Cmo05g00563 319 PANTHER GATA TRANSCRIPTION FACTOR 25 25 272 - -
Cmo05g00563 319 SMART tify_2 71 106 IPR010399 -
Cmo05g00563 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 250 - -
Cmo05g00563 319 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Cmo05g00563 319 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cmo05g00563 319 MobiDBLite consensus disorder prediction 171 203 - -
Cmo05g00563 319 ProSiteProfiles GATA-type zinc finger domain profile. 205 259 IPR000679 GO:0006355|GO:0043565
Cmo05g00563 319 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cmo05g00563 319 MobiDBLite consensus disorder prediction 171 186 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00563 Cmo12g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00563 Cmo-Chr5:2759604 Cmo12g00161 Cmo-Chr12:1036433 5.49E-55 dispersed
Cmo05g00561 Cmo-Chr5:2750666 Cmo05g00563 Cmo-Chr5:2759604 8.10E-64 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9823 PF06203 CCT 3.80E-15 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00563 - - csv:101214839 501.901