Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00563 | ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACTCCCGACTGCGGCGACACCGGCGAGGCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGCGATGGTTCAAGCCAGCTCACTCTTTCCTTCCGTGGCCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTAGGTGGCTGCGAACTATCTTCGGGTCAGCCAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACATCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCTTGCGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGTCTCTCCAAGGAACCACAAGGGCACATCTAGCAAATCCATTAACCATTTCTGCCTGGGTTTTCGGAATTTTGTGGAACCCATGAAGCTGATTGATGGTTAG | 960 | 50.42 | MYGRAEPLTMGDQIASTPDCGDTGEALDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQPSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCESDAAKDFDCRRGNHAPSNLVSFPNVSPRNHKGTSSKSINHFCLGFRNFVEPMKLIDG | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2759604 | 2767115 | - | CmoCh05G005630.1 | Cmo05g00563 | 382698 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00563 | 319 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Cmo05g00563 | 319 | Gene3D | - | 202 | 252 | IPR013088 | GO:0006355|GO:0008270 | |
Cmo05g00563 | 319 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00563 | 319 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00563 | 319 | MobiDBLite | consensus disorder prediction | 187 | 201 | - | - | |
Cmo05g00563 | 319 | Pfam | tify domain | 73 | 105 | IPR010399 | - | |
Cmo05g00563 | 319 | Pfam | GATA zinc finger | 206 | 242 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00563 | 319 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 25 | 272 | IPR045280 | GO:0006355 | |
Cmo05g00563 | 319 | PANTHER | GATA TRANSCRIPTION FACTOR 25 | 25 | 272 | - | - | |
Cmo05g00563 | 319 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Cmo05g00563 | 319 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 250 | - | - | |
Cmo05g00563 | 319 | SMART | GATA_3 | 200 | 253 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00563 | 319 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515 | |
Cmo05g00563 | 319 | MobiDBLite | consensus disorder prediction | 171 | 203 | - | - | |
Cmo05g00563 | 319 | ProSiteProfiles | GATA-type zinc finger domain profile. | 205 | 259 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo05g00563 | 319 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515 | |
Cmo05g00563 | 319 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00563 | Cmo12g00161 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00563 | Cmo-Chr5:2759604 | Cmo12g00161 | Cmo-Chr12:1036433 | 5.49E-55 | dispersed | |
Cmo05g00561 | Cmo-Chr5:2750666 | Cmo05g00563 | Cmo-Chr5:2759604 | 8.10E-64 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9823 | PF06203 | CCT | 3.80E-15 | CL0281 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00563 | - | - | csv:101214839 | 501.901 |