Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00572 ATGGTTCATCATGGTTCTACCCAATTTTCTCATAAATTGGGAATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCAACATCACACGGTCTGAGGCACAAATCTGTCAGTCTTCAGCTCTTAGGCAGTGTAAGTCGCTCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAACCTAGTGGCGGAGCCGGGACTGCTGTTTTAAAATCTGCAGCTGTGGTTTTGACAAGATATTATGATGCGTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGTAGTTGGAAGAAAAGTAGTACATACTTTGTTACGAGTTCTTACGTTCAACCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTCTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTATGGCATTTGCCTATTGTATATCAAGTTTGATTCAACAAGTACAAAAGTTTTCTTCTGAATCAAATGACTCGAGTGATACAAGAAATATGGGCTATGATTTTGCTGGTAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACTGCTGGGGGTCTCGGAACTGTATTGCTTACTCTTGCGGGTCGTGAGATATTTACTAACTTCCTTTCAAGCGTAATGATTCACGCAACGCGACCATTTGTAGTAAATGAATGGATTCAAACAAAGATTAATGGATATGAAGTCTCTGGAACGGTTGAGCATGTTGGTTGGTGGTCACCGACCATTATCCGAGGAGATGATCGTGAAGCAGTTCATATTCCGAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACATCGATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCGACTCCCATTCGCACTGTTCAGAAAATATATGGTGAGGTTGACTTGGAGAACGTACCATTTTCCGAGACCATGTATTCACGTACGGGTGCTACTAACCGTCCACTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAGAGTCTCTAGAACTCCAACTCGCTCGTCAAACGAAGAAAAAGATGCTAAACAAGAGACAGTCTCAACTACAGGGACGAAAGCCCCCGACACAGCTGGTTCAACATCAAGTATTGATATGAAAACAGATGATAGAAAGCCGGTTACTCCATCTGGTACTGTGCCTAAGCCGCCTTCAACAGGGTCGTCGGTGTCCAACACTCAGACTCAGGATCTATCAACCAGTACTCCAGAAGAAAGCAGCATGGAAAAGGCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTGATTGGACTGAATTCCAAGCTGCCCAAAAGATCACCCTCAGCTTCCAGTTCCGGCAGCGAGAAAGCTGATATTCCTCCTCCCTCAAGCTTGCAGAATAATAAGCAAGATGGCGAGAAGGCCTCTGCATCATCAGTAGTGGGGAGGCCACCATTGGAGGAGAATATCGTCCTTGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTCGGATCCGTCTCCCTTTCACTCTCCTGCTGATTCAAAAGAAATCTCCACACAGAGGAATGGGAGCGAGTTCCCTCCCAATAGCAAGGATTTGAGAGATGGCCAGTTGCCTGCAGTTCCTGGTGCGACGAATAATGATTGA 2154 43.64 MVHHGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSHGLRHKSVSLQLLGSVSRSMYPVSSRANVFVCRSVLEPSGGAGTAVLKSAAVVLTRYYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYFVTSSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVMAFAYCISSLIQQVQKFSSESNDSSDTRNMGYDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKARVSRTPTRSSNEEKDAKQETVSTTGTKAPDTAGSTSSIDMKTDDRKPVTPSGTVPKPPSTGSSVSNTQTQDLSTSTPEESSMEKAVTSNEIKGEKKDVIGLNSKLPKRSPSASSSGSEKADIPPPSSLQNNKQDGEKASASSVVGRPPLEENIVLGVALEGSKRTLPIDEDSDPSPFHSPADSKEISTQRNGSEFPPNSKDLRDGQLPAVPGATNND 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2804121 2809769 + CmoCh05G005720.1 Cmo05g00572 382707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00572 717 MobiDBLite consensus disorder prediction 664 678 - -
Cmo05g00572 717 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Cmo05g00572 717 MobiDBLite consensus disorder prediction 588 602 - -
Cmo05g00572 717 MobiDBLite consensus disorder prediction 681 696 - -
Cmo05g00572 717 Gene3D - 192 296 - -
Cmo05g00572 717 MobiDBLite consensus disorder prediction 606 638 - -
Cmo05g00572 717 Gene3D - 298 353 IPR023408 -
Cmo05g00572 717 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cmo05g00572 717 MobiDBLite consensus disorder prediction 555 587 - -
Cmo05g00572 717 MobiDBLite consensus disorder prediction 521 538 - -
Cmo05g00572 717 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 708 - -
Cmo05g00572 717 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 708 IPR045042 -
Cmo05g00572 717 MobiDBLite consensus disorder prediction 496 520 - -
Cmo05g00572 717 MobiDBLite consensus disorder prediction 496 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00881 Cmo-Chr12:8017112 Cmo05g00572 Cmo-Chr5:2804121 3.10E-07 transposed
Cmo16g00807 Cmo-Chr16:4154484 Cmo05g00572 Cmo-Chr5:2804121 0 transposed
Cmo12g00153 Cmo-Chr12:995821 Cmo05g00572 Cmo-Chr5:2804121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00572 K22047 - csv:101213477 1184.86