Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00572 | ATGGTTCATCATGGTTCTACCCAATTTTCTCATAAATTGGGAATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCAACATCACACGGTCTGAGGCACAAATCTGTCAGTCTTCAGCTCTTAGGCAGTGTAAGTCGCTCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAACCTAGTGGCGGAGCCGGGACTGCTGTTTTAAAATCTGCAGCTGTGGTTTTGACAAGATATTATGATGCGTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGTAGTTGGAAGAAAAGTAGTACATACTTTGTTACGAGTTCTTACGTTCAACCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTCTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTATGGCATTTGCCTATTGTATATCAAGTTTGATTCAACAAGTACAAAAGTTTTCTTCTGAATCAAATGACTCGAGTGATACAAGAAATATGGGCTATGATTTTGCTGGTAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACTGCTGGGGGTCTCGGAACTGTATTGCTTACTCTTGCGGGTCGTGAGATATTTACTAACTTCCTTTCAAGCGTAATGATTCACGCAACGCGACCATTTGTAGTAAATGAATGGATTCAAACAAAGATTAATGGATATGAAGTCTCTGGAACGGTTGAGCATGTTGGTTGGTGGTCACCGACCATTATCCGAGGAGATGATCGTGAAGCAGTTCATATTCCGAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACATCGATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCGACTCCCATTCGCACTGTTCAGAAAATATATGGTGAGGTTGACTTGGAGAACGTACCATTTTCCGAGACCATGTATTCACGTACGGGTGCTACTAACCGTCCACTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAGAGTCTCTAGAACTCCAACTCGCTCGTCAAACGAAGAAAAAGATGCTAAACAAGAGACAGTCTCAACTACAGGGACGAAAGCCCCCGACACAGCTGGTTCAACATCAAGTATTGATATGAAAACAGATGATAGAAAGCCGGTTACTCCATCTGGTACTGTGCCTAAGCCGCCTTCAACAGGGTCGTCGGTGTCCAACACTCAGACTCAGGATCTATCAACCAGTACTCCAGAAGAAAGCAGCATGGAAAAGGCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTGATTGGACTGAATTCCAAGCTGCCCAAAAGATCACCCTCAGCTTCCAGTTCCGGCAGCGAGAAAGCTGATATTCCTCCTCCCTCAAGCTTGCAGAATAATAAGCAAGATGGCGAGAAGGCCTCTGCATCATCAGTAGTGGGGAGGCCACCATTGGAGGAGAATATCGTCCTTGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTCGGATCCGTCTCCCTTTCACTCTCCTGCTGATTCAAAAGAAATCTCCACACAGAGGAATGGGAGCGAGTTCCCTCCCAATAGCAAGGATTTGAGAGATGGCCAGTTGCCTGCAGTTCCTGGTGCGACGAATAATGATTGA | 2154 | 43.64 | MVHHGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSHGLRHKSVSLQLLGSVSRSMYPVSSRANVFVCRSVLEPSGGAGTAVLKSAAVVLTRYYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYFVTSSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVMAFAYCISSLIQQVQKFSSESNDSSDTRNMGYDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNIDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKARVSRTPTRSSNEEKDAKQETVSTTGTKAPDTAGSTSSIDMKTDDRKPVTPSGTVPKPPSTGSSVSNTQTQDLSTSTPEESSMEKAVTSNEIKGEKKDVIGLNSKLPKRSPSASSSGSEKADIPPPSSLQNNKQDGEKASASSVVGRPPLEENIVLGVALEGSKRTLPIDEDSDPSPFHSPADSKEISTQRNGSEFPPNSKDLRDGQLPAVPGATNND | 717 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2804121 | 2809769 | + | CmoCh05G005720.1 | Cmo05g00572 | 382707 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 664 | 678 | - | - | |
Cmo05g00572 | 717 | Pfam | Mechanosensitive ion channel | 239 | 446 | IPR006685 | GO:0016020|GO:0055085 | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 588 | 602 | - | - | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 681 | 696 | - | - | |
Cmo05g00572 | 717 | Gene3D | - | 192 | 296 | - | - | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 606 | 638 | - | - | |
Cmo05g00572 | 717 | Gene3D | - | 298 | 353 | IPR023408 | - | |
Cmo05g00572 | 717 | SUPERFAMILY | Sm-like ribonucleoproteins | 282 | 352 | IPR010920 | - | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 555 | 587 | - | - | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 521 | 538 | - | - | |
Cmo05g00572 | 717 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 1 | 708 | - | - | |
Cmo05g00572 | 717 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 708 | IPR045042 | - | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 496 | 520 | - | - | |
Cmo05g00572 | 717 | MobiDBLite | consensus disorder prediction | 496 | 717 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00881 | Cmo-Chr12:8017112 | Cmo05g00572 | Cmo-Chr5:2804121 | 3.10E-07 | transposed | |
Cmo16g00807 | Cmo-Chr16:4154484 | Cmo05g00572 | Cmo-Chr5:2804121 | 0 | transposed | |
Cmo12g00153 | Cmo-Chr12:995821 | Cmo05g00572 | Cmo-Chr5:2804121 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00572 | K22047 | - | csv:101213477 | 1184.86 |