Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00589 ATGGAGCTCGACGAGCACGTTTTCTTAGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAACTTAGCGATCTCTGTTGGAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCGGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCCGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGACGGTTCCGCCTATGCCGCCATGGAAGTAGCAGCGACGCCTCTGCCATTTCAAGGAGAACGTCCGAATGCGGAACGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTAGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACAAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCGAAGAATCTAATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGGTAAAAAATCAAACGAAAATGCTCGAAAATGAATCTCTAAGGCTGCTTGAAACCGAAATCAATATCTGGTTGATTTTTGAACAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGATGGATCAAATCCGAGCACGAATTCATTGAACAACACAAAACCGAGCGAATTGATAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGTTTCTAAGTTATGGGGGAAGCTGCTTGTAG 1038 46.15 MELDEHVFLEELMALRRDSNWDAIPNELSDLCWNAWAFDYCFDQSGMNFHPNSSSEPLSAQNLDEFYHPLGNEFSVPGMDGSAYAAMEVAATPLPFQGERPNAEREGEGEEEEELGFLADEIQNMEVVQVQSACKMEPNQSPELPVFNIGTCSSIEQKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKVKNQTKMLENESLRLLETEINIWLIFEQMDRTAILADAIEYMKELLEKIGNLQREVDGSNPSTNSLNNTKPSELIARNSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQFLSYGGSCL 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2916192 2918112 + CmoCh05G005890.1 Cmo05g00589 382724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00589 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 255 IPR036638 GO:0046983
Cmo05g00589 345 MobiDBLite consensus disorder prediction 157 177 - -
Cmo05g00589 345 Gene3D - 155 258 IPR036638 GO:0046983
Cmo05g00589 345 PANTHER - 225 336 - -
Cmo05g00589 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 201 - -
Cmo05g00589 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 225 336 - -
Cmo05g00589 345 CDD ACT_UUR-ACR-like 289 330 - -
Cmo05g00589 345 SMART finulus 172 249 IPR011598 GO:0046983
Cmo05g00589 345 Coils Coil 233 253 - -
Cmo05g00589 345 Pfam Helix-loop-helix DNA-binding domain 172 243 IPR011598 GO:0046983
Cmo05g00589 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 243 IPR011598 GO:0046983
Cmo05g00589 345 PANTHER - 2 201 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00589 Cmo09g00594 CCT
Cmo01g01513 Cmo05g00589 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00589 Cmo-Chr5:2916192 Cmo14g00777 Cmo-Chr14:3943672 1.38E-31 dispersed
Cmo12g00135 Cmo-Chr12:844845 Cmo05g00589 Cmo-Chr5:2916192 3.46E-164 wgd
Cmo03g00895 Cmo-Chr3:6930028 Cmo05g00589 Cmo-Chr5:2916192 2.45E-66 wgd
Cmo05g00589 Cmo-Chr5:2916192 Cmo07g00598 Cmo-Chr7:2685687 5.23E-48 wgd
Cmo05g00589 Cmo-Chr5:2916192 Cmo09g00594 Cmo-Chr9:2937102 1.04E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9826 PF00010 HLH 1.00E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00589 - - csv:101221329 450.669