Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00589 | ATGGAGCTCGACGAGCACGTTTTCTTAGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAACTTAGCGATCTCTGTTGGAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCGGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCCGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGACGGTTCCGCCTATGCCGCCATGGAAGTAGCAGCGACGCCTCTGCCATTTCAAGGAGAACGTCCGAATGCGGAACGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTAGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACAAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCGAAGAATCTAATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGGTAAAAAATCAAACGAAAATGCTCGAAAATGAATCTCTAAGGCTGCTTGAAACCGAAATCAATATCTGGTTGATTTTTGAACAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGATGGATCAAATCCGAGCACGAATTCATTGAACAACACAAAACCGAGCGAATTGATAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGTTTCTAAGTTATGGGGGAAGCTGCTTGTAG | 1038 | 46.15 | MELDEHVFLEELMALRRDSNWDAIPNELSDLCWNAWAFDYCFDQSGMNFHPNSSSEPLSAQNLDEFYHPLGNEFSVPGMDGSAYAAMEVAATPLPFQGERPNAEREGEGEEEEELGFLADEIQNMEVVQVQSACKMEPNQSPELPVFNIGTCSSIEQKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKVKNQTKMLENESLRLLETEINIWLIFEQMDRTAILADAIEYMKELLEKIGNLQREVDGSNPSTNSLNNTKPSELIARNSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQFLSYGGSCL | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2916192 | 2918112 | + | CmoCh05G005890.1 | Cmo05g00589 | 382724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00589 | 345 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 255 | IPR036638 | GO:0046983 | |
Cmo05g00589 | 345 | MobiDBLite | consensus disorder prediction | 157 | 177 | - | - | |
Cmo05g00589 | 345 | Gene3D | - | 155 | 258 | IPR036638 | GO:0046983 | |
Cmo05g00589 | 345 | PANTHER | - | 225 | 336 | - | - | |
Cmo05g00589 | 345 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 2 | 201 | - | - | |
Cmo05g00589 | 345 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 225 | 336 | - | - | |
Cmo05g00589 | 345 | CDD | ACT_UUR-ACR-like | 289 | 330 | - | - | |
Cmo05g00589 | 345 | SMART | finulus | 172 | 249 | IPR011598 | GO:0046983 | |
Cmo05g00589 | 345 | Coils | Coil | 233 | 253 | - | - | |
Cmo05g00589 | 345 | Pfam | Helix-loop-helix DNA-binding domain | 172 | 243 | IPR011598 | GO:0046983 | |
Cmo05g00589 | 345 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 166 | 243 | IPR011598 | GO:0046983 | |
Cmo05g00589 | 345 | PANTHER | - | 2 | 201 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00589 | Cmo09g00594 | CCT | |
Cmo01g01513 | Cmo05g00589 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00589 | Cmo-Chr5:2916192 | Cmo14g00777 | Cmo-Chr14:3943672 | 1.38E-31 | dispersed | |
Cmo12g00135 | Cmo-Chr12:844845 | Cmo05g00589 | Cmo-Chr5:2916192 | 3.46E-164 | wgd | |
Cmo03g00895 | Cmo-Chr3:6930028 | Cmo05g00589 | Cmo-Chr5:2916192 | 2.45E-66 | wgd | |
Cmo05g00589 | Cmo-Chr5:2916192 | Cmo07g00598 | Cmo-Chr7:2685687 | 5.23E-48 | wgd | |
Cmo05g00589 | Cmo-Chr5:2916192 | Cmo09g00594 | Cmo-Chr9:2937102 | 1.04E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9826 | PF00010 | HLH | 1.00E-05 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00589 | - | - | csv:101221329 | 450.669 |