Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00590 ATGTCTCCACCACTACTTAATGTTGAGGAGGGGGAGGAAAGTCGCAGCAATGTCACTCTGTTGGCTTCCCCGAGCTCTATGGAGAGTGTCAGTCAAAACAATTTGGGATTTGAAGAGCGTAATTACATGGGATTATCTGTTTCTTCTTCAGAGGAAAGCTGTATGACTGCCACAAAGCCTAATGGGAACAAACACTTGCTGAATCTCAAGGCTACGGAATTGAGGCTAGGCATTCCTGGATCTGAATCCCCCGAGAGAGATCCAGATATCAGCTTTCGTAGTTCTTCTCAACTTGACGAAAAAACACTATTTCCTTTGCACCCATCAGGTGATGGTCGCTACTCTTCACCACATAAGGCTGTGGTCTCAGGCAACAAAAGGGGGTTTTCAGATGCTATGAACGAATTCTCAGAGGTGAAATTGCCTCTGTTTTGTTTTGGAAAATATAACGCTAACATAGGTTTGAAAGCTAGTTCTTTGCTAGAGAACCTTGGAAGTGAAATGGGGAAATTGAAAGAGGCAACTACACAAAAGGCTGTACAAGAGAGGTCTCTAGAAAATAGTGAAACTAGGCCATCTCAAAGCGAGGCTGCAAATAACAACACCAGTGCACCTGTTTCTAAGGCACAGGTTGTCGGTTGGCCGCCCATAAGATCTTTCAGAAAAAACACATTGGCTACAACTTCAAAGAACAATGATGAAGTTGATGGAAAGGCAATACCTGGTGCACTCTTCGTCAAAGTTAGCATGGATGGTGCTCCTTATCTGAGGAAGGTAGATCTGAGGAACTACTCTGCATACCAGAAGCTGTCTTCTGCCCTTGAAAAAATGTTCAGCTGTTTTACTATAGGTCAATATGGAGCTCATGGAGCTCTGGGCATGGAGAAAATGAGTGAGAGCAAGCTGAAAGATCTTCTTCATGGCTCAGAATATGTTCTAACATATGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGGAGATGTTCATCGACTCTTGTAAGAGGCTGAGGATTATGAAGAGCTCGGATGCAATTGGCCTGGCTCCTAGGGCGGTGGAGAAGTGCCGGAACAGGAACTAG 1092 44.87 MSPPLLNVEEGEESRSNVTLLASPSSMESVSQNNLGFEERNYMGLSVSSSEESCMTATKPNGNKHLLNLKATELRLGIPGSESPERDPDISFRSSSQLDEKTLFPLHPSGDGRYSSPHKAVVSGNKRGFSDAMNEFSEVKLPLFCFGKYNANIGLKASSLLENLGSEMGKLKEATTQKAVQERSLENSETRPSQSEAANNNTSAPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAIPGALFVKVSMDGAPYLRKVDLRNYSAYQKLSSALEKMFSCFTIGQYGAHGALGMEKMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSDAIGLAPRAVEKCRNRN 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2923936 2926796 + CmoCh05G005900.1 Cmo05g00590 382725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00590 363 Gene3D - 239 357 - -
Cmo05g00590 363 PANTHER AUXIN-RESPONSIVE PROTEIN 173 354 - -
Cmo05g00590 363 SUPERFAMILY CAD & PB1 domains 240 344 - -
Cmo05g00590 363 MobiDBLite consensus disorder prediction 172 208 - -
Cmo05g00590 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 149 IPR003311 GO:0005634|GO:0006355
Cmo05g00590 363 ProSiteProfiles PB1 domain profile. 243 345 IPR000270 GO:0005515
Cmo05g00590 363 MobiDBLite consensus disorder prediction 178 208 - -
Cmo05g00590 363 Coils Coil 171 191 - -
Cmo05g00590 363 MobiDBLite consensus disorder prediction 80 94 - -
Cmo05g00590 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 173 354 IPR003311 GO:0005634|GO:0006355
Cmo05g00590 363 PANTHER AUXIN-RESPONSIVE PROTEIN 16 149 - -
Cmo05g00590 363 MobiDBLite consensus disorder prediction 1 32 - -
Cmo05g00590 363 Pfam AUX/IAA family 72 354 IPR033389 -
Cmo05g00590 363 MobiDBLite consensus disorder prediction 77 120 - -
Cmo05g00590 363 MobiDBLite consensus disorder prediction 12 32 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00590 K14484 IAA; auxin-responsive protein IAA - csv:101221088 615.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00590 Cmo-Chr5:2923936 Cmo10g00672 Cmo-Chr10:3087573 2.52E-98 dispersed
Cmo09g00610 Cmo-Chr9:3028204 Cmo05g00590 Cmo-Chr5:2923936 2.57E-30 dispersed
Cmo14g01891 Cmo-Chr14:14130454 Cmo05g00590 Cmo-Chr5:2923936 1.58E-34 dispersed
Cmo17g00135 Cmo-Chr17:780011 Cmo05g00590 Cmo-Chr5:2923936 4.74E-41 dispersed
Cmo12g00134 Cmo-Chr12:832421 Cmo05g00590 Cmo-Chr5:2923936 0 wgd
Cmo05g00590 Cmo-Chr5:2923936 Cmo07g00601 Cmo-Chr7:2699161 7.90E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9827 PF02309 AUX_IAA 2.20E-91 CL0072 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00590 Cmo_Chr05 FPKM 4.336283 6.871974 4.041576 4.5634 5.885569 4.175224 7.853622 3.25763 3.099098 3.405114