Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00593 ATGGCTGTTTCAACCAGTTTTTCCGGTGCTAAATTGGAAGCCCTTTTGTTGAAATCGGCGGCGACTTCCTCTTCTTCTCACCTTCCCCTTTTCTGCAAATCCATTCGGAGCAAGAGAATCCCATTTCAGAGAAGTGGGTTTTCGTCTTTGAGGTGCGAGGTTGCTTCATCGGATGTTTTGGTTCAGAACGATGAAATTGATCGAGCGAAATCTTCCAATCTCTCTGCGCTTGAACAGCTCAAAACCTCTGCTGCTGACAGATATACAAAGGAACGAAGCAGCATTGTTGTGATTGGGCTTAGTATTCATACAACACCTGTTGAAATGCGAGAAAAACTAGCTATTCCTGAGGCAGAGTGGCCTCGCGCCATTGGTGAGCTCTGTGGCTTAAACCACATTGAAGAAGCAGCTGTTCTTAGCACCTGCAACAGAATGGAGATATATGTTGTTGCTCTATCTCAGCATCGTGGAGTGAAAGAAGTGACTGAATGGATGTCTAAGACAAGTGGAATCCCGGTTTCGGAAATTTGCCAGCACCGGTTCTTGTTGTATAACAACGATGCCACGCAACATATTTTCGAAGTTTCAGCTGGCCTTGACTCCCTTGTCCTAGGAGAAGGCCAAATCCTTGCTCAGGTTAAACAAGTTGTCAAGGTTGGGCAGGGTGTTGCAGGATTTGGAAGGAACATTAGTGGCCTTTTCAAGCACGCCATCACGGTGGGTAAGCGGGTTAGGACGGAGACTAATATTGCTGCTGGAGCTGTTTCTGTGAGTTCAGCTGCTGTAGAATTGGCCTTAATGAAACTTCCTGAACCCTCACATGCCACTGCAAGAATGCTGGTGATTGGAGCTGGTAAGATGGGAAAGCTTGTTATTAAACATTTGGTAGCTAAAGGCTGCACAAAGATGGTCGTGGTGAATCGATCGGAAGAGCGAGTCACAGCCATCCGTGAGGAAATCAAGGATGTCGAGATCATCTACAAGCCGCTCACCGAAATGCTTAGTTGTGCAGCTGAAGCAGATGTGATATTCACCAGCACAGCTTCTGAAAGCCTTTTGTTTACAAAGGAGGAGGTTAAGAATCTCCCCCCTGTTGGGCATGATGTTGGGGGCTTAAGGCTTTTCCTCGATATCTCCGTTCCTCGAAACGTCGGAGCATGCATCAATGATCTAGAAAATGTACGAGTTTACAATGTCGACGACCTTAAGGAGGTAGTCGCTGCAAATAAGGAGGATAGGCTTCGAAAAGCTATGGAAGCACAATCAATTATCACTGAAGAATCCAAACAATTTGAAGCATGGAGGGATTCATTAGAGACTGTTCCAACAATCAAGAAACTGAGAGCATATGCAGAAAGAATCAGAATGGCTGAACTCGAAAAATGTCTTTCAAAGATGGGTGATGACATCCCAAAGAAAACTCGACGAGCCGTGGACGATCTTAGTCGTGGTATAGTTAACAAGCTGCTTCATGGTCCAATGCAGCATTTGAGATGCGACGGTAGCGACAGCAGGACATTAAGCGAGACGTTGGAGAACATGCACGCGTTAAATAGAATGTTTAGCCTCGAAACAGAGATAGCAGTGTTGGAACAGAAGATCAGAGCTAAAGTTGAACAAAACCAGAAGTAA 1632 45.47 MAVSTSFSGAKLEALLLKSAATSSSSHLPLFCKSIRSKRIPFQRSGFSSLRCEVASSDVLVQNDEIDRAKSSNLSALEQLKTSAADRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEPSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREEIKDVEIIYKPLTEMLSCAAEADVIFTSTASESLLFTKEEVKNLPPVGHDVGGLRLFLDISVPRNVGACINDLENVRVYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIKKLRAYAERIRMAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2941846 2944553 - CmoCh05G005930.1 Cmo05g00593 382728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00593 543 Gene3D - 93 253 IPR036343 GO:0008883|GO:0033014|GO:0050661
Cmo05g00593 543 Coils Coil 520 540 - -
Cmo05g00593 543 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 417 503 IPR036453 GO:0008883|GO:0033014|GO:0050661
Cmo05g00593 543 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 94 250 IPR036343 GO:0008883|GO:0033014|GO:0050661
Cmo05g00593 543 Pfam Shikimate / quinate 5-dehydrogenase 264 405 IPR006151 -
Cmo05g00593 543 PANTHER GLUTAMYL-TRNA REDUCTASE 1 543 - -
Cmo05g00593 543 Coils Coil 306 326 - -
Cmo05g00593 543 ProSitePatterns Glutamyl-tRNA reductase signature. 191 214 IPR018214 GO:0008883
Cmo05g00593 543 CDD NAD_bind_Glutamyl_tRNA_reduct 95 417 - -
Cmo05g00593 543 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 253 413 IPR036291 -
Cmo05g00593 543 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 543 - -
Cmo05g00593 543 Gene3D - 254 406 - -
Cmo05g00593 543 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 419 523 IPR015896 GO:0008883|GO:0033014|GO:0050661
Cmo05g00593 543 TIGRFAM hemA: glutamyl-tRNA reductase 95 503 IPR000343 GO:0008883|GO:0033014|GO:0050661
Cmo05g00593 543 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 98 248 IPR015895 GO:0008883|GO:0033014|GO:0050661
Cmo05g00593 543 Hamap Glutamyl-tRNA reductase [hemA]. 94 521 IPR000343 GO:0008883|GO:0033014|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00593 K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] - csv:101220615 958.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00593 Cmo-Chr5:2941846 Cmo19g00516 Cmo-Chr19:6083431 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g563 . . Bda01g00924 . . . . . Cmo05g00593 . . . . . Sed04g0235 . . Bhi04g00899 Tan02g2513 Cmetu03g1732 . Hepe10g0401 . Lcy13g1452 Cla08g01187 Cam08g1652 Cec08g1228 Cco08g1347 Clacu08g1348 . Cre08g1134 Cone4ag1273 . Cone17ag1156 Cone20ag0573 . . . Cme03g01777 Blo17g00084 Blo18g00094 . Bda13g01345 Bpe02g01169 Bpe14g00500 Bma01g01362 Bma02g00099 . . . . Cma05g00567 Car05g00511 . Cpe11g00496 . . . . . . . . . . . . . . . Lsi08g01050 Csa02g02234 Chy03g01283 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007166 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00593 Cmo_Chr05 FPKM 7.1619 7.634231 0.069536 0.178223 0.0 0.0 0.0 0.0 0.0 0.0