Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00597 ATGGCTTTCCCCTCAGCCTTCTTTCTTCTTCTGTTCTTCACTTCCTCCATTGCTTCTTCTCAAGCTCTTACTGCCGCCATAGCCAACCAGTCCCAGTTCTTCCTTCTCATGCAAACAACTGCCTCCGGTGAGCTCCTCTCTAATTGGGATCTTTCACAAGGAAAATCCTTATGCAACTTCACTGGAATCCGCTGCAATGATGGCGGTCATGTCGTTCGGATCGATATCTCCGGCCACCCTCTCTCCGGTACCTTCCCGGACGATGTATGCTCTTACCTGCCATCACTAAGAGTTCTTCGCCTCGCTGATACCGGATTGTCGGGGCGTTTTCCCTCAGGAATCACCAACTGCTCTCTCATTCAAGAGCTTGACATGAGTTCTCTATATCTCAATGGAACAATCCCGGATTTATCGCAAATGAAACAACTCCGTGTACTCGACCTCTCCTACAATTCGTTCACTGGCGATTTCCCCATGTCGGTTTTCGACCTTGTTAATCTCGAGATACTGAATTTCAACGAGAATTATAATCTCAACTTATGGAAATTACCTGAGAAGATCTCTGGATTGAAGAAGCTGAAATCTATGGTGTTGACAACATGTATGTTGGACGGAGAAATCCCTCGATCGATCGGGAACATGACGTCGCTTATTGATCTCGAACTAAGTGGGAATTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTTCTCAAGAACCTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCGGAAGAGCTCGGAAATCTAACTGAGCTCGTCGACGTCGACATGTCGGTGAACCTTTTGACAGGGGAGATTCCGGAATCTATATGCAAACTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTAACAGGAGAGATTCCAAGTGTATTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAATTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCTATGGTCGTTGTCGACTTGTCGGAGAATCGCCTGTCGGGACCATTGCCATTGGATATATGCAGAGGAGGGGAATTGCTCTACTTTCTTGTTCTTCAAAACAGCCTTTCCGGAGAAATTCCGGCGAGTTTTGCTGAATGCCGGTCACTTTTAAGGTTTAGAATTAGTTTTAATCAGCTGGTCGGAGCAATTCCTGAAGGTGTTCTTGGTCTCCCACATGTTTCAATCATTGATGTTGCTCATAATAACCTCACTGGTTCCATTTCAAATTCAATCTCACAGGCTAGAAACTTGTCGGAATTGTTCTTACAAAAAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGCAGCCACCAATCTGGTGAAGCTAGATCTCAGTAACAATCTCCTCTCCGGCGCAGTGCCGCCGCAGATTGGTAGCCTGAAGAAGCTAAATCTGGTGATGTTACAAGGAAACCAATTGAATTCTTCAATCCCTAGTTCATTGACATCGTTAAAATCCCTCAATGTTCTTGATCTCTCGAACAATCGTTTATCCGGGAAAATCCCAGAAAGTTTGGGTAAATTGTTCCCAAGTTCCTTGAATTTCTCGAACAATCAACTTTCCGGTCCGATTCCGATGTCTTTGATCAAACAAGGGTTAGCCGATAGCTTCTCCGGCAACCCAAATCTCTGTCTTCCACCGGCGTATTTCATTTCATCGGATCAGAAATTCCCCATTTGTTCACAAATTTCCTTAAAAAAAGGTCTAGATTTCATCTGGGTAATCGTAATTCCGTTGCTTATTTTCTTCACCGGCGCCGTTCTGTTTCTAAAACGAAGAAAATCACCAGAGATCGAAAGCAAAGAAACCCTCTGTTCGTCGTTCTTCCATAAACAGAGCTTCGACCAAAACAGGATTCTCGAATCCATGGCGGAAATGAACATCGTCGGCCATGGCGGATCGGGAACGGTTTACAAAATCGAGCTCGGAAACGGAGAAATCGTCGCCGTGAAAAGGCTATGGAATCGAAGAACGAAACATTTCTTCGACAAGGAATTGAAAACAGAGGTCGAAACCCTAGAAACTATCAGACATAAGAACATCGTGAAACTCCACAGCTACTTCTCCGGTCGAAATTGCAGCCTTCTGGTTTACGAATACATCCCAAACGGAAACCTATGGGACGCCCTTCATAAAGGGTGGGTTTATCTCGATTGGCCGACGCGCCGCCGCATCGCGGTGGGGATCGCGCAAGCCCTCGCCTATCTCCACCACGATCTCTCGCCGCCCGTAATACACAGAGACATCAAAACCACAAACATTCTATTAGACGAAAATTACGAACCCAAAGTGGCAGATTTCGGCATAGCCAAAGTTCTTCAAGGAACCAAAGATTCAACGAACTCTGTAATCGCCGGCACATACGGCTACTTAGCTCCCGAATATGCATATTCATCGAAGGAGACAACGAAGAGCGACGTGTATAGCTTCGGGGTGGTGTTAATGGAGCTGATCACCGGGAAGACGCCGATTGCGGCGGAGTACGGCGAGAACAAGAACATTGTGTTCTGGGTTTCTAATAAAATGGACACAAAAGAAGGGGTTCTTGAGATTCTTGATGAGAGATTAAAAGGGTTGTTCATGGATGAGATGGTAAAGGCCTTGAGGATCGCCATTCGCTGCACTTACAAGAATCCAGCGCTCCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTCCAAGAGGTCAAAAAGGGCGAAGATACGTATGATGTCACTCAAATAAAGTACCCTTTTTGA 2790 45.27 MAFPSAFFLLLFFTSSIASSQALTAAIANQSQFFLLMQTTASGELLSNWDLSQGKSLCNFTGIRCNDGGHVVRIDISGHPLSGTFPDDVCSYLPSLRVLRLADTGLSGRFPSGITNCSLIQELDMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFDLVNLEILNFNENYNLNLWKLPEKISGLKKLKSMVLTTCMLDGEIPRSIGNMTSLIDLELSGNFLKGEIPKEISFLKNLQQLELYYNELTGNIPEELGNLTELVDVDMSVNLLTGEIPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAECRSLLRFRISFNQLVGAIPEGVLGLPHVSIIDVAHNNLTGSISNSISQARNLSELFLQKNRISGVIPPEISAATNLVKLDLSNNLLSGAVPPQIGSLKKLNLVMLQGNQLNSSIPSSLTSLKSLNVLDLSNNRLSGKIPESLGKLFPSSLNFSNNQLSGPIPMSLIKQGLADSFSGNPNLCLPPAYFISSDQKFPICSQISLKKGLDFIWVIVIPLLIFFTGAVLFLKRRKSPEIESKETLCSSFFHKQSFDQNRILESMAEMNIVGHGGSGTVYKIELGNGEIVAVKRLWNRRTKHFFDKELKTEVETLETIRHKNIVKLHSYFSGRNCSLLVYEYIPNGNLWDALHKGWVYLDWPTRRRIAVGIAQALAYLHHDLSPPVIHRDIKTTNILLDENYEPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKETTKSDVYSFGVVLMELITGKTPIAAEYGENKNIVFWVSNKMDTKEGVLEILDERLKGLFMDEMVKALRIAIRCTYKNPALRPAMGEVVQLLQEVKKGEDTYDVTQIKYPF 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2970194 2973161 + CmoCh05G005970.1 Cmo05g00597 382732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00597 929 SUPERFAMILY RNI-like 70 349 - -
Cmo05g00597 929 Pfam Protein kinase domain 643 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00597 929 Gene3D Transferase(Phosphotransferase) domain 1 719 926 - -
Cmo05g00597 929 ProSiteProfiles Protein kinase domain profile. 641 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00597 929 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524
Cmo05g00597 929 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 918 - -
Cmo05g00597 929 SUPERFAMILY L domain-like 281 567 - -
Cmo05g00597 929 Gene3D Phosphorylase Kinase; domain 1 615 718 - -
Cmo05g00597 929 SUPERFAMILY Protein kinase-like (PK-like) 621 910 IPR011009 -
Cmo05g00597 929 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515
Cmo05g00597 929 SMART serkin_6 641 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00597 929 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 4 918 - -
Cmo05g00597 929 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Cmo05g00597 929 ProSiteProfiles Leucine-rich repeat profile. 504 526 IPR001611 GO:0005515
Cmo05g00597 929 SMART LRR_typ_2 164 190 IPR003591 -
Cmo05g00597 929 SMART LRR_typ_2 455 478 IPR003591 -
Cmo05g00597 929 SMART LRR_typ_2 93 117 IPR003591 -
Cmo05g00597 929 SMART LRR_typ_2 502 526 IPR003591 -
Cmo05g00597 929 SMART LRR_typ_2 238 262 IPR003591 -
Cmo05g00597 929 SMART LRR_typ_2 286 310 IPR003591 -
Cmo05g00597 929 PRINTS Leucine-rich repeat signature 457 470 - -
Cmo05g00597 929 PRINTS Leucine-rich repeat signature 502 515 - -
Cmo05g00597 929 Gene3D Ribonuclease Inhibitor 292 571 IPR032675 -
Cmo05g00597 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Cmo05g00597 929 Gene3D Ribonuclease Inhibitor 36 178 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01507 Cmo05g00597 CCT
Cmo05g00597 Cmo09g00599 CCT
Cmo05g00597 Cmo12g00184 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00597 Cmo-Chr5:2970194 Cmo09g00600 Cmo-Chr9:2978743 0 dispersed
Cmo15g00563 Cmo-Chr15:2676626 Cmo05g00597 Cmo-Chr5:2970194 0 dispersed
Cmo12g00184 Cmo-Chr12:1201778 Cmo05g00597 Cmo-Chr5:2970194 0 wgd
Cmo05g00597 Cmo-Chr5:2970194 Cmo09g00599 Cmo-Chr9:2974990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74348 PF00069 Pkinase 1.20E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00597 - - csv:101220145 1546.18