Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00609 ATGGAACCCCCTGAATTTGTCCACCTTAAAGCTTACACCTCCACCCACTCCTCCTCCGACCAACACCGCACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCAACCACGCCGACGCCGACGCCGACGCCGACCACGCCGACGCCGGGTTATTATCCGACAATAGTAATAATAATCATCATAATATTAATACTCCCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGAATTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAATTTGGAATTAATCACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGTCCACCCGAAACGCCGCCGCTATCTTCAACCCGGATGTTGTTTCCGTTCCGGCGAAAGCTCGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCCCTCCTTCTTCCTCTTTCCCCGACCACCTCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTAAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCCGGAGAGGAGCGTAGGTGTATGCATTGCGCCACCAATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAATGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAGACACTCCAATTCCCACCGGAAAGTTATGGAGCTGCGGAGGCAGAAGGAGATTCTTAGAGGCCAACAACAACCGCAGCAATTGATTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCTAGCTGTGATAATTATCTTATCCATCATGTAGGCCCCGACTTCCGGCAGCTCATCTGA 1029 52.67 MEPPEFVHLKAYTSTHSSSDQHRTAAAEHDLFFVENLLDFSNHADADADADHADAGLLSDNSNNNHHNINTPSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDELLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVSTRNAAAIFNPDVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPKAVVTAKKKDSPEGGVSPAGEERRCMHCATNKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTRHSNSHRKVMELRRQKEILRGQQQPQQLILDHHRQDLIFDASSCDNYLIHHVGPDFRQLI 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3045969 3047142 - CmoCh05G006090.1 Cmo05g00609 382744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00609 342 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Cmo05g00609 342 PIRSF Txn_fac_GATA_plant 11 321 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo05g00609 342 MobiDBLite consensus disorder prediction 185 228 - -
Cmo05g00609 342 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Cmo05g00609 342 PANTHER GATA TRANSCRIPTION FACTOR 1 342 - -
Cmo05g00609 342 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Cmo05g00609 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
Cmo05g00609 342 Gene3D - 227 310 IPR013088 GO:0006355|GO:0008270
Cmo05g00609 342 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Cmo05g00609 342 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Cmo05g00609 342 PANTHER GATA TRANSCRIPTION FACTOR 1 342 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00609 Cmo09g00615 CCT
Cmo05g00609 Cmo09g00615 ECH
Cmo05g00609 Cmo12g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01444 Cmo-Chr4:7395439 Cmo05g00609 Cmo-Chr5:3045969 5.41E-45 dispersed
Cmo05g00609 Cmo-Chr5:3045969 Cmo08g00689 Cmo-Chr8:4393551 2.96E-63 dispersed
Cmo06g01720 Cmo-Chr6:11818161 Cmo05g00609 Cmo-Chr5:3045969 4.99E-34 dispersed
Cmo18g00898 Cmo-Chr18:10224604 Cmo05g00609 Cmo-Chr5:3045969 2.47E-42 dispersed
Cmo20g00819 Cmo-Chr20:4050695 Cmo05g00609 Cmo-Chr5:3045969 1.56E-37 dispersed
Cmo12g00198 Cmo-Chr12:1292596 Cmo05g00609 Cmo-Chr5:3045969 1.17E-119 wgd
Cmo05g00609 Cmo-Chr5:3045969 Cmo09g00615 Cmo-Chr9:3073403 5.22E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9828 PF00320 GATA 6.30E-15 CL0167 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00609 - - csv:101205219 365.155