Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00612 ATGGAAGAACAGTTGCTGCCGCCGTCGAAGTGGGAAGGAGAAGTCTCCGCCGAGACAACCGCCGGGAAGCCTCACGAAATCTGGCCGTTGCTGGCCGATGAGTTCTGCAGTCTCCACAAATGGCTTCCGATAGACACGTGTCACTACGTGGAAGGTGTACAGGGGCAGCCGGGTCTGATCCGGTACTGCGCCACCACCGACACGACGTCGTCATCAGAACCATCGATTAAGTGGGCCCACGAGAGGCTGAAATTGATTGATCCGACCGAACATATTCTCTCCTACGAGATTCTGGACAACAACGTCGGATTCAAGTCGTACGTGGCCACCATGAAGCTGCTGCCTGGCGGCGGGGACGACGGCGGCGGGTGCAAGATGGTGTGGTCGTTTGAGGCGGATCCGATTGAAGGGTGGCCGTTGGAGGAGTTCGTGAAGTATCTTGAATTTTCTCTGCAGCAAATGGTGAACAAAATGGCAGAGTATTTGCAGAAAAGTCCCTGA 501 55.29 MEEQLLPPSKWEGEVSAETTAGKPHEIWPLLADEFCSLHKWLPIDTCHYVEGVQGQPGLIRYCATTDTTSSSEPSIKWAHERLKLIDPTEHILSYEILDNNVGFKSYVATMKLLPGGGDDGGGCKMVWSFEADPIEGWPLEEFVKYLEFSLQQMVNKMAEYLQKSP 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3057570 3058070 - CmoCh05G006120.1 Cmo05g00612 382747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00612 166 Pfam Polyketide cyclase / dehydrase and lipid transport 19 162 IPR019587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00612 - - - cmos:111462382 342.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00612 Cmo-Chr5:3057570 Cmo04g01201 Cmo-Chr4:6137402 1.36E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g273 . . . . Bpe02g01186 . . . Cmo05g00612 . . . . Car12g00228 Sed01g1257 Cpe07g00208 . Bhi04g00863 Tan02g2552 Cmetu03g1677 . Hepe10g0374 . Lcy13g1423 . . . . . . . . . . Cone20ag0326 . . . . Blo17g00064 Blo18g00076 . . Bpe14g00521 . . . . . . . Cma12g00245 . Car05g00531 Cpe11g00514 . . . . . . . . Cla08g01212 Cam08g1674 Cec08g1252 Cco08g1370 Clacu08g1372 . Cre08g1156 . Csa02g02260 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009180 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00612 Cmo_Chr05 FPKM 44.119087 42.341743 17.98509 18.112219 16.765871 15.71626 14.551824 202.238907 201.000748 198.114014