Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00619 ATGAGCAGAAACGAAAACGCCACAACAACGTGTTCATCTCCGGAGCCGAACAAGAAGCCCAAACGCATCAGAGACACAGAGGACTCGAAGCACCCGCTTTACAGAGGCGTCCGAATGAGAAATTGGGGGAAATGGGTGTCCGAAATTCGTGAGCCAAGAAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCAGCCCTGAAATGGCTGCACGAGCCCACGATGTAGCCGCCTTAAGCATCAAAGGAAAAGCCGCAATCCTTAATTTCCCCGACCTGGTACACCTCCTACCCCGCCCTGTTTCACTCGCCCCTCGCGACGTTCAGGCCGCCGCCGCTAAAGCCGCTCGTATGCATCATTTCTCCTCTACTCATACTAATAACAACAATTCCTCCTCCTCCTCCTCCTCCGATGCCACCGATGAGCTCACGGAAATCGTCCAGCTACCGAGTCTCGGAACGAGTTACGACGGCGGCGACGGCGGATTCGGTGGTGAGTTTGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACACGCCGCCATGGGTGCAGAGCTTGGAGGATTGTGATAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA 627 52.95 MSRNENATTTCSSPEPNKKPKRIRDTEDSKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGKAAILNFPDLVHLLPRPVSLAPRDVQAAAAKAARMHHFSSTHTNNNNSSSSSSSDATDELTEIVQLPSLGTSYDGGDGGFGGEFVFFDSGQELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3104970 3105596 - CmoCh05G006190.1 Cmo05g00619 382754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00619 208 MobiDBLite consensus disorder prediction 119 139 - -
Cmo05g00619 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 208 - -
Cmo05g00619 208 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Cmo05g00619 208 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Cmo05g00619 208 MobiDBLite consensus disorder prediction 1 16 - -
Cmo05g00619 208 MobiDBLite consensus disorder prediction 17 32 - -
Cmo05g00619 208 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Cmo05g00619 208 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Cmo05g00619 208 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Cmo05g00619 208 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Cmo05g00619 208 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Cmo05g00619 208 PANTHER DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 12 208 - -
Cmo05g00619 208 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Cmo05g00619 208 MobiDBLite consensus disorder prediction 115 139 - -
Cmo05g00619 208 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00619 Cmo-Chr5:3104970 Cmo10g00689 Cmo-Chr10:3142161 2.63E-60 dispersed
Cmo12g00206 Cmo-Chr12:1361052 Cmo05g00619 Cmo-Chr5:3104970 5.56E-75 wgd
Cmo05g00619 Cmo-Chr5:3104970 Cmo09g00617 Cmo-Chr9:3084770 3.32E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9829 PF00847 AP2 1.60E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00619 K09286 - csv:101206242 249.595