Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00619 | ATGAGCAGAAACGAAAACGCCACAACAACGTGTTCATCTCCGGAGCCGAACAAGAAGCCCAAACGCATCAGAGACACAGAGGACTCGAAGCACCCGCTTTACAGAGGCGTCCGAATGAGAAATTGGGGGAAATGGGTGTCCGAAATTCGTGAGCCAAGAAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCAGCCCTGAAATGGCTGCACGAGCCCACGATGTAGCCGCCTTAAGCATCAAAGGAAAAGCCGCAATCCTTAATTTCCCCGACCTGGTACACCTCCTACCCCGCCCTGTTTCACTCGCCCCTCGCGACGTTCAGGCCGCCGCCGCTAAAGCCGCTCGTATGCATCATTTCTCCTCTACTCATACTAATAACAACAATTCCTCCTCCTCCTCCTCCTCCGATGCCACCGATGAGCTCACGGAAATCGTCCAGCTACCGAGTCTCGGAACGAGTTACGACGGCGGCGACGGCGGATTCGGTGGTGAGTTTGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACACGCCGCCATGGGTGCAGAGCTTGGAGGATTGTGATAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA | 627 | 52.95 | MSRNENATTTCSSPEPNKKPKRIRDTEDSKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGKAAILNFPDLVHLLPRPVSLAPRDVQAAAAKAARMHHFSSTHTNNNNSSSSSSSDATDELTEIVQLPSLGTSYDGGDGGFGGEFVFFDSGQELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3104970 | 3105596 | - | CmoCh05G006190.1 | Cmo05g00619 | 382754 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00619 | 208 | MobiDBLite | consensus disorder prediction | 119 | 139 | - | - | |
Cmo05g00619 | 208 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 12 | 208 | - | - | |
Cmo05g00619 | 208 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677 | |
Cmo05g00619 | 208 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cmo05g00619 | 208 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Cmo05g00619 | 208 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | PANTHER | DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED | 12 | 208 | - | - | |
Cmo05g00619 | 208 | Pfam | AP2 domain | 32 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00619 | 208 | MobiDBLite | consensus disorder prediction | 115 | 139 | - | - | |
Cmo05g00619 | 208 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00619 | Cmo-Chr5:3104970 | Cmo10g00689 | Cmo-Chr10:3142161 | 2.63E-60 | dispersed | |
Cmo12g00206 | Cmo-Chr12:1361052 | Cmo05g00619 | Cmo-Chr5:3104970 | 5.56E-75 | wgd | |
Cmo05g00619 | Cmo-Chr5:3104970 | Cmo09g00617 | Cmo-Chr9:3084770 | 3.32E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9829 | PF00847 | AP2 | 1.60E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00619 | K09286 | - | csv:101206242 | 249.595 |