Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00630 ATGGAGAATTCTTCTCTCGATCAAGAGACCGCGAAGAAAGTTCTTCGTCAGGTCGAGTTCTATTTCAGTGACAGTAATCTTCCTAGAGATGGTTTTCTTAAGAAAACTATTAGCGGAATCGCCGATGGAATGGTCGATTTGTCTTTGATTTGTACGTTTTCTCGGATGAAAGGACATCTTAAATTGAAGCAGGACGTGAAACCAGAGGAGATTCCAGAAGATACTCTGAAGGCCGTCGCTGAAACTCTAAGAAGCTCCTCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAACTACTGAACTCCCAAAGCCTGAAGAGTTAATAGAACAATTGGATGATAAAACCATAGCTGCATCACCGTTTGAATATGATGTCAAGCTTGAAGATGTAGAAGCTTTCTTTAATCAAATTGCAAAGGTCAACAGTGTGAGGCTGCCGCGCCACGTTGCAGATAAACGGGTTTTCTGTGGAACTGCCTTGGTAGAATTTTCTACCGAGGAAGATGCAGAAAAAGTTTTGAAGGAGAGCTTGCTATATGCTGGTGCCAAGTTAGAATTGAAACCAAAGAGGGATTTTGATGCGGAGAGAGCAAAAGAGACAGAGGAGTTCGAAAGTTCACGCGCAAACTCGAGTGCAAACCGCAAGAATAATAATCCCCCAGAATCAAACTACCCTAAAGGCTTAATTGTCGCCTTTACATTGAAAAGTGTGTCATCTGGAAGTTCTGCTGAGGAAAATGGATCTCATGGTGTAGCCGCTGATAAGACCGAATGCAAACCAGACGAAAGATTAGATTCCTCAAAGAACGACTCTGAGAAAACGGAGATAATAGGGGAAGAAGCAAATATGAGTAAAGATGAAGAGATTAAGAGTGCTGATGATAACAATGGAGAGGCTGATAAGAAAAATGACTTAGGCAACGAAGAAAGACCCGAAGTGGAAGAGCGGACTACGAATGATACCGTCGATGAACATGAAGAGGATGAAGAAAAACCCACAGCTGCTAAATCCAAAAACAACATGAATGTGGTTTCGCGCGAGGATTTGAAGGTTATTTTTCAGAAGTTCGGAAGCGTCAAGTTCATCGATTTTAAGATTGGAGACGAGTCGGGCTATATCAGATTTGAAGAGCCTGAAGCTGCCCAGAAAGCTCGTGCGGCTGCAGTACTTGCCGAACAGGGGGGGCTGGTTGTGAAGAGTTTTATAGCCACTTTAGAGCCAGTATCAGGTGAGGCTGAGAAGGAGTATTGGAGGCTACTCCGCAGCAATCAAGAAAAGCATCATCGCGACTTTAAGAGCAACCGTGGAAGGGGTGGTAAATTCAATAGAGGAGGTGGCAAGCATGCTCGGTCGAGAGGGCACGGGCACTGCAACGGCAACGACCGAGGTCGCCCGAATAAAGCACAGAAGGTGTGA 1425 44.35 MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTISGIADGMVDLSLICTFSRMKGHLKLKQDVKPEEIPEDTLKAVAETLRSSSTIKVSEDGKKIGRTTELPKPEELIEQLDDKTIAASPFEYDVKLEDVEAFFNQIAKVNSVRLPRHVADKRVFCGTALVEFSTEEDAEKVLKESLLYAGAKLELKPKRDFDAERAKETEEFESSRANSSANRKNNNPPESNYPKGLIVAFTLKSVSSGSSAEENGSHGVAADKTECKPDERLDSSKNDSEKTEIIGEEANMSKDEEIKSADDNNGEADKKNDLGNEERPEVEERTTNDTVDEHEEDEEKPTAAKSKNNMNVVSREDLKVIFQKFGSVKFIDFKIGDESGYIRFEEPEAAQKARAAAVLAEQGGLVVKSFIATLEPVSGEAEKEYWRLLRSNQEKHHRDFKSNRGRGGKFNRGGGKHARSRGHGHCNGNDRGRPNKAQKV 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3168035 3172665 - CmoCh05G006300.1 Cmo05g00630 382765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00630 474 Gene3D - 110 207 IPR012677 -
Cmo05g00630 474 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo05g00630 474 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo05g00630 474 PRINTS Lupus La protein signature 158 176 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo05g00630 474 MobiDBLite consensus disorder prediction 198 227 - -
Cmo05g00630 474 ProSiteProfiles xRRM domain profile. 331 457 IPR014886 GO:0003723
Cmo05g00630 474 SMART la 8 101 IPR006630 -
Cmo05g00630 474 MobiDBLite consensus disorder prediction 253 323 - -
Cmo05g00630 474 CDD RRM1_La 118 190 - -
Cmo05g00630 474 MobiDBLite consensus disorder prediction 427 474 - -
Cmo05g00630 474 SMART rrm1_1 342 409 IPR000504 GO:0003723
Cmo05g00630 474 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cmo05g00630 474 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Cmo05g00630 474 Pfam La domain 14 84 IPR006630 -
Cmo05g00630 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 177 IPR000504 GO:0003723
Cmo05g00630 474 SUPERFAMILY Winged helix DNA-binding domain 8 107 IPR036390 -
Cmo05g00630 474 Pfam RNA binding motif 347 438 IPR014886 GO:0003723
Cmo05g00630 474 PANTHER OS02G0610400 PROTEIN 4 474 - -
Cmo05g00630 474 PANTHER LUPUS LA PROTEIN-RELATED 4 474 IPR045180 -
Cmo05g00630 474 Gene3D - 319 439 IPR012677 -
Cmo05g00630 474 MobiDBLite consensus disorder prediction 209 226 - -
Cmo05g00630 474 MobiDBLite consensus disorder prediction 242 343 - -
Cmo05g00630 474 Gene3D - 2 105 IPR036388 -
Cmo05g00630 474 SUPERFAMILY RNA-binding domain, RBD 118 389 IPR035979 GO:0003676
Cmo05g00630 474 MobiDBLite consensus disorder prediction 457 474 - -
Cmo05g00630 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 202 IPR000504 GO:0003723
Cmo05g00630 474 CDD LA_like_plant 10 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00630 K11090 LA, SSB; lupus La protein - csv:101204162 722.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00630 Cmo12g00218 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01386 Cmo-Chr3:10144318 Cmo05g00630 Cmo-Chr5:3168035 3.72E-14 dispersed
Cmo05g00630 Cmo-Chr5:3168035 Cmo07g00114 Cmo-Chr7:642422 4.44E-12 dispersed
Cmo12g00218 Cmo-Chr12:1430385 Cmo05g00630 Cmo-Chr5:3168035 0 transposed
Cmo12g00217 Cmo-Chr12:1429725 Cmo05g00630 Cmo-Chr5:3168035 1.32E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00630 Cmo_Chr05 FPKM 2.988038 3.378711 2.55961 3.053781 3.957074 4.152936 4.2802 3.092211 3.832643 2.242477