Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00631 ATGGCTTCTTATGTAAAGGAAATCGGAGGGAAGCTTTCAAACGACCCATTTCTTACAGAGGAGATAGGCGGCGGCGGAGGAGGAGGAGGAGAAGAAAAAGACAAGATGCGGCGAGTTTGGGTACCGGGACCGGTGATAGTGGGTGCAGGGCCGTCGGGGCTAGCGGCGGCGGTATGTTTGAAACAAAAAGGGGTACCGAGTATTGTACTGGAGAGATCCAACTGTATAGCGTCGTTATGGCAGTTGAAAACGTATGATCGCCTACGGTTGCATCTACCGAAGCAATTCTGCGAGCTGCCGTTTATGAGTTTTCCGGCGGAATTTCCGACGTACCCTTCCAAGAATCAATTCGTAAGCTATTTGGAGGTTTACGCTGAGAGATTCGATATACGGCCGAGATTCAACGAGACAGTAGAGGAGGCGGAGTACGATCACACGCTCGGGTTTTGGCGCGTGAGGAGTAAGCATGGCAATCCCGACGAGATCGCGACGGTGACGGAGTACGTTTCACGGTGGCTGATTGTCGCCACCGGTGAAAATGCGGAGGCGGTGGTGCCGAAACTCGACGGAATGGACGTATTTGATGGCCCGATAAAGCATGCGAGTTTGTACAAAAGCGGCGAAGAATTTGGCGGGAAGAAAGTTTTGGTCGTCGGCTGTGGGAATTCCGGCATGGAAGTTAGTTTGGATCTCTGTGAACACAGAGCCAGCCCTTCCCTCGTCGTCAGAGACGCAGTTCACGTGCTGCCACGAGAGATGCTGGGAAAATCGACGTTTGGGCTGTCCATATGGTTGCTGAAGTGGCTGCCCGTACGTCTTGTCGATGGGTTCCTGCTGATGGTGTCCAGGATGATTCTTGGGGACACTGCCAAATTCGGATTGGACCGGCCCATTATCGGCCCACTTCGTCTTAAGAACCTGTCCGGCAAGACACCCGTCTTGGATGTTGGTACCCTTGCCAAGATCAAAACGGGACATATTAAGGTACGTCCAAGCATCAAGCGGCTGAGACGTCATGCAGTGGAGTTTGTTGATGGAAGAATAGAAAGATATGATTCCGTTATAATGGCTACTGGTTATAGAAGCAATGTGCCCTCTTGGCTAAAGGAGGGAGAAATGTTTAGGAAAGAAGATGGCTTGCCAAGGAAGCCGTTTGGGTGGAAAGGGAAAAATGGGCTATATGCTGCGGGATTCACAAATCGTGGATTACTCGGCTCATCAATGGATGCCAAGAGAATCGCCGAGGACATCGAACGGTGCTGGAAAGCCGACGCCAAGTTTTGTACTCCCTTCACGCAATCTCTACCCTCCACGTAG 1317 51.56 MASYVKEIGGKLSNDPFLTEEIGGGGGGGGEEKDKMRRVWVPGPVIVGAGPSGLAAAVCLKQKGVPSIVLERSNCIASLWQLKTYDRLRLHLPKQFCELPFMSFPAEFPTYPSKNQFVSYLEVYAERFDIRPRFNETVEEAEYDHTLGFWRVRSKHGNPDEIATVTEYVSRWLIVATGENAEAVVPKLDGMDVFDGPIKHASLYKSGEEFGGKKVLVVGCGNSGMEVSLDLCEHRASPSLVVRDAVHVLPREMLGKSTFGLSIWLLKWLPVRLVDGFLLMVSRMILGDTAKFGLDRPIIGPLRLKNLSGKTPVLDVGTLAKIKTGHIKVRPSIKRLRRHAVEFVDGRIERYDSVIMATGYRSNVPSWLKEGEMFRKEDGLPRKPFGWKGKNGLYAAGFTNRGLLGSSMDAKRIAEDIERCWKADAKFCTPFTQSLPST 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3174132 3176660 - CmoCh05G006310.1 Cmo05g00631 382766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00631 438 PRINTS Pyridine nucleotide disulphide reductase class-II signature 43 65 - -
Cmo05g00631 438 PRINTS Pyridine nucleotide disulphide reductase class-II signature 210 234 - -
Cmo05g00631 438 SUPERFAMILY FAD/NAD(P)-binding domain 45 293 IPR036188 -
Cmo05g00631 438 SUPERFAMILY FAD/NAD(P)-binding domain 213 418 IPR036188 -
Cmo05g00631 438 Gene3D - 44 426 IPR036188 -
Cmo05g00631 438 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 33 430 - -
Cmo05g00631 438 PRINTS FAD-dependent pyridine nucleotide reductase signature 44 63 - -
Cmo05g00631 438 PRINTS FAD-dependent pyridine nucleotide reductase signature 214 232 - -
Cmo05g00631 438 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 33 430 - -
Cmo05g00631 438 Pfam Flavin-binding monooxygenase-like 46 365 IPR020946 GO:0004499|GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00631 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101203913 719.539
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00631 Cmo11g00612 CCT
Cmo05g00631 Cmo10g00653 CCT
Cmo05g00631 Cmo10g00653 ECH
Cmo05g00631 Cmo11g00612 ECH
Cmo05g00631 Cmo12g00219 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00631 Cmo-Chr5:3174132 Cmo10g00653 Cmo-Chr10:2995428 0 dispersed
Cmo14g00441 Cmo-Chr14:2101184 Cmo05g00631 Cmo-Chr5:3174132 4.94E-45 transposed
Cmo12g00219 Cmo-Chr12:1439894 Cmo05g00631 Cmo-Chr5:3174132 0 wgd
Cmo12g00265 Cmo-Chr12:1703640 Cmo05g00631 Cmo-Chr5:3174132 5.06E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
Vvi11g343 . . . . Bpe01g00529 . Bma07g00487 Bma11g00514 Cmo10g00653 Cmo11g00612 Cma05g00605 . Car05g00547 . Sed08g0763 Cpe04g01132 Cpe18g00436 Bhi02g01125 Tan09g1293 Cmetu02g0257 . Hepe09g0755 . . . . . . . . . . . Cone4ag0728 . Lsi06g00878 . . Cme02g01353 Blo08g00288 Blo14g00491 Bda02g00446 Bda09g01155 Bpe08g00471 . . . . Cmo05g00631 . Cma10g00614 Cma11g00607 Car10g00568 . . . . . . . . . . Cla06g00846 Cam06g0913 Cec06g0922 Cco06g0949 Clacu06g0913 Cmu06g0880 Cre06g1661 . Csa01g01717 Chy02g01877 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00631 Cmo_Chr05 FPKM 8.662482 7.531322 8.091295 7.389218 10.803815 11.58843 12.076804 7.672429 7.45832 9.241698