Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00634 ATGCTCCGTTCGAGCAATTTGGGTAGAAACAGCGTTCGCTGGAGAGTGGAGCTACGCCATTGGACGGAGGGAACCGAATCTGTGGGCTGCGGGATACCCATGGGCGGCCAGGAAACCATGGAAGCTGAGAGAATGGAGAAAGAACAACAGCGGACCACCAGGAAAAGGCCTCGTTCCGCATGGGATGTGGTGCCATCCGAACAAGAGGCTAATAAGGCTTTGGCGGTGGTTAAGGATGAGGTCAAAAGGCATGCCTCGCCCCCGAGAAGAGACGATGATCGTGAAGGACACTATGTCTTCAACCTCGGCGAGAATCTCACTCCGAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGCTGGGACCGGCAAACTCGAGAATATGTAGCCATTAAGGTAGTTCGGAGCATAAGAAAGTACCGTGATGCAGCCATGGTTGAGGTGGATATACTTAAGCATCTTGCTCAGAATGACACAGGCTGCTTACGTTGTGTGCAGATTAGAAATTGGTTTGACTACCGCAATCACATATGTATAGTATTTGAGAGGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACCACCCATTCCCTGTGGATCTTGTTCGGGAGTTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATTTACACTTAATCCACACAGACCTGAAGCCAGAAAATATACTTCTTGTGTCTTCTGAATATATAAAGCTTCCTGGTTGTAAGAGGGTTTCGTCGGATGAAACGCAATTCAGGTGCTTGCCCAAGTCTAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATGAGAATCATAGCTCCATTGTTTCTACGAGGCATTACAGAGCCCCTGAGGTTATTCTAGGTCTTGGATGGAGTTATCCATGCGATTTGTGGAGTATCGGTTGCATTCTTGTCGAACTGTGTTCGGGCAAAGCACTGTTTCAAACTCACGAGAACTTGGAGCATTTGGCAATGATGGAGAGGGTGTTGGGACCTATACCAGGGCACATGATTCAGAGTGCTGACCAAAACGCAGAAAAATATTTCAAACGAGGTTTGCATCTAAACTGGCCCGAAGGAGCAGTTTCAAGAGAAAGCATTCGAGCCGTGAAGAAACTCGATCGTTTGAAGGATATGGTTTCACAACATGTGGGTTTCTCCAGGCTATTGACTGATCTGTTGTATGATCTATTGAAATACGACCCTTCGGAACGCCCAACAGCTCGACAAGCCCTTAACCATTCTTTCTTTAAGAGTATAGCATGA 1317 45.79 MLRSSNLGRNSVRWRVELRHWTEGTESVGCGIPMGGQETMEAERMEKEQQRTTRKRPRSAWDVVPSEQEANKALAVVKDEVKRHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMVEVDILKHLAQNDTGCLRCVQIRNWFDYRNHICIVFERLGPSLFDFLKRNKYHPFPVDLVREFGRQLLESVAYMHDLHLIHTDLKPENILLVSSEYIKLPGCKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNENHSSIVSTRHYRAPEVILGLGWSYPCDLWSIGCILVELCSGKALFQTHENLEHLAMMERVLGPIPGHMIQSADQNAEKYFKRGLHLNWPEGAVSRESIRAVKKLDRLKDMVSQHVGFSRLLTDLLYDLLKYDPSERPTARQALNHSFFKSIA 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3206631 3212798 + CmoCh05G006340.1 Cmo05g00634 382769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00634 438 Gene3D Phosphorylase Kinase; domain 1 97 190 - -
Cmo05g00634 438 SMART serkin_6 110 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00634 438 MobiDBLite consensus disorder prediction 42 61 - -
Cmo05g00634 438 PANTHER BNAA07G37640D PROTEIN 82 435 - -
Cmo05g00634 438 SUPERFAMILY Protein kinase-like (PK-like) 97 437 IPR011009 -
Cmo05g00634 438 Pfam Protein kinase domain 110 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00634 438 Gene3D Transferase(Phosphotransferase) domain 1 164 434 - -
Cmo05g00634 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Cmo05g00634 438 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 82 435 - -
Cmo05g00634 438 ProSiteProfiles Protein kinase domain profile. 110 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00634 438 CDD PKc_CLK 97 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00634 K08287 E2.7.12.1; dual-specificity kinase [EC:2.7.12.1] - csv:101210171 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00634 Cmo-Chr5:3206631 Cmo06g00321 Cmo-Chr6:1564869 0 dispersed
Cmo20g00569 Cmo-Chr20:2761867 Cmo05g00634 Cmo-Chr5:3206631 9.90E-17 dispersed
Cmo05g00634 Cmo-Chr5:3206631 Cmo13g00797 Cmo-Chr13:7553469 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g364 . . . . Bpe02g01198 . . . Cmo05g00634 . . Cma05g00608 . . Sed01g1289 . . Bhi04g00814 Tan02g2583 Cmetu03g0841 . Hepe10g0340 . Lcy13g1385 . . . . . . . . . . Cone20ag0616 . . . Cme03g01723 . Blo18g00067 Bda01g00951 . . . Bma01g01330 . . . . . . . Car05g00551 Cpe11g00531 . . . . . . . . Cla08g01240 Cam08g1698 Cec08g1277 Cco08g1399 Clacu08g1394 . Cre08g1180 Lsi08g01102 . Chy03g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009152 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74350 PF00069 Pkinase 1.20E-51 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00634 Cmo_Chr05 FPKM 11.663217 11.225207 10.126319 8.445386 5.885978 4.231255 5.498483 8.975525 9.178535 10.524489