Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00647 ATGTGGACTCATAATAAGGTTGTAAAGGAAAAGAAGGAGGCGGTCACTGGAAATCAATTGGTGGGAATCGCCATTGATAAGGACAAAGGAAGTCAAGTTGCTCTCAAATGGGCCACTGAGAATCTCCTTCTCAAGGGCCAAACTGCCATTCTCATCCATGTCAAACTCAGACCTTCCTCCCATTCTGGCTCGTTCCTGTCTTCTCCTAAGGTAATGTCAACAACTGACAATGGCAATGGCAATAGCAATGTTTCGGTAAGCAAGGAAATTGATCCGAGCACGAGGGAGTTGTTCCTTCCCTTTCGATGCTTCTGTACCCGTAAAGATGTGTCTTGCAAAGACATAGTCATAGAAGATGTAGATGTTGGAAAAGCGCTGATCGAATATGTCTCTCAGGCTGGAATTGATAATTTGGTTGTCGGAGCCACGACTAGAAGTGGCTTTTTGAGATTCAAGACGATAGATATTCCGGGCAGTGTTATCAAAGGAGCACCAGACTTCTGCAATGTTTATGTCATATCAAGAGGGAAAATCCAAAATATGCGAACGGCGTCACGTCCTGCTCCTGCTTCTTCTCCTCTTCGAAGTTTATTGCTGAACCAATCTGGTGTTGGATCACATTCAGCTGAATCACAATTTCCTCAGATTGAAAATATGAGACCTGAAAAGCCTCCCCTCGAAGCAGCACGCCGATCTCAGGACAACTCCGAGTTCAGGTCACCGTTCACTAGGAAAGGCTACCATGGAAAAATGCCAGGGGAAATCAGTCTGCCAGATACCGATATTTCTTTTGTTAGCTCGGGAAGGCCGAGTGTTGACCGATTGTTCCCTGCATTATTTGACACCCCAGATTCAGGAAGGACTCCCCCACGACTGTCCAGTGGCAACGATTCTGATATATATGTTAGCTTCGAGTCACAGCAGTTCGGACGTAAATCATTGGATGTAAACTATCCACCTGAATTTTCATCGATGTTATCAGAAGATGATAGATTATCGACTTCGTCACAAAGTATGGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCAATTACAGCTAAACAAAAGAAGTTTCATACAAACTCTTCACATCTGCTGCAGGCGGTAGAGCTTCAGCGATGGAAATCCGAGGAAGAACAGAGATTAGAGGAGGCGAGACATGCAGAGGAAGCTGCATTAGCGATGGTCGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATGGAGGCAGCTGAAGCATCTAAAAGGATCGCTGAGTTGGAAGCACGGAAGAGAATTAATGCGGAAATGAAAGCATTCAAGGAAGCAGATGAGAAGAAGAAGGCATTAGATGCTTTAGCAAACCAAGACGTCAGGTATCGGAAGTACTCGATCGAGGAGATCGAAGCTGCTACCGAGTTATTTTCAGAATCTTTAAAGATTGGAGAGGGAGGTTATGGGCCTGTTTATAAAGGTTATTTAGACCACACACCGGTTGCGATTAAGGTATTACGCCCCGATGCAGCTCAAGGAAGGTCACAGTTCCAGAAAGAGGTGAGAAACGTATCGGTATCGTTCGTTCACAGATTCTCCGGTGTCGAAGTACTTAGCTGCATACGACATCCGAACATGGTTCTTCTCCTTGGAGCATGCCCTGAATATGGCTGCTTGGTCTATGAGTTTATGGGACATGGTAGCTTGGATGACTGCCTCTTTCGCCGGGGCGATAACTCGAGACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATCGGCACTGCCTTGTTGTTCCTTCACCAGACTAAGCCTGAACCGCTCGTGCACCGTGATTTGAAGCCAGCCAACATCTTGCTCGATAATAACTACGTTAGCAAGATTAGCGATGTCGGTTTGGCTAGGCTTGTTCCCCCATCTATAGCAGACAGTGTGACACAATATCGAATGACTTCAACCGCTGGCACGTTCTGTTATATCGATCCCGAGTATCAACAAACTGGCATGCTCGGTGTAAAATCCGACATATATTCTTTGGGGATCATGTTTTTGCAGCTGATTACAGCAAAGCCACCCATGGGATTGACTCACCATGTGGAAAGAGCTATTGAGAAAGGGACTTTATCCGAAATTCTTGATCCATCTGTTACTGATTGGCCGGTTGAAGAAACCTCCTCCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAGGATCGACCCGATCTTTGTAAGGTCGTTCTCCCCGAACTCATCAAATTACAATCGCTTGCCGAAGCCAGCATGTACTCGTCGACGAGGGACGGCGTTAGCAGCCCTCTATGGAGTCTACTCACAGTCGTAGTAAAAACTTCATTTCCAGAAATAGACGACTGA 2409 45.87 MWTHNKVVKEKKEAVTGNQLVGIAIDKDKGSQVALKWATENLLLKGQTAILIHVKLRPSSHSGSFLSSPKVMSTTDNGNGNSNVSVSKEIDPSTRELFLPFRCFCTRKDVSCKDIVIEDVDVGKALIEYVSQAGIDNLVVGATTRSGFLRFKTIDIPGSVIKGAPDFCNVYVISRGKIQNMRTASRPAPASSPLRSLLLNQSGVGSHSAESQFPQIENMRPEKPPLEAARRSQDNSEFRSPFTRKGYHGKMPGEISLPDTDISFVSSGRPSVDRLFPALFDTPDSGRTPPRLSSGNDSDIYVSFESQQFGRKSLDVNYPPEFSSMLSEDDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEAITAKQKKFHTNSSHLLQAVELQRWKSEEEQRLEEARHAEEAALAMVEQEKAKSRAAMEAAEASKRIAELEARKRINAEMKAFKEADEKKKALDALANQDVRYRKYSIEEIEAATELFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQKEVRNVSVSFVHRFSGVEVLSCIRHPNMVLLLGACPEYGCLVYEFMGHGSLDDCLFRRGDNSRPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDNNYVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVERAIEKGTLSEILDPSVTDWPVEETSSFAELALKCAELRRKDRPDLCKVVLPELIKLQSLAEASMYSSTRDGVSSPLWSLLTVVVKTSFPEIDD 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3265098 3269489 + CmoCh05G006470.1 Cmo05g00647 382782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00647 802 MobiDBLite consensus disorder prediction 279 298 - -
Cmo05g00647 802 Pfam Protein kinase domain 486 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00647 802 MobiDBLite consensus disorder prediction 205 254 - -
Cmo05g00647 802 PANTHER OS02G0152300 PROTEIN 12 784 - -
Cmo05g00647 802 Gene3D Phosphorylase Kinase; domain 1 462 570 - -
Cmo05g00647 802 Coils Coil 396 439 - -
Cmo05g00647 802 ProSiteProfiles Protein kinase domain profile. 484 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00647 802 SMART serkin_6 484 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00647 802 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 172 - -
Cmo05g00647 802 Gene3D HUPs 19 173 IPR014729 -
Cmo05g00647 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Cmo05g00647 802 SUPERFAMILY Protein kinase-like (PK-like) 467 758 IPR011009 -
Cmo05g00647 802 MobiDBLite consensus disorder prediction 223 244 - -
Cmo05g00647 802 CDD STK_N 20 176 - -
Cmo05g00647 802 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 12 784 - -
Cmo05g00647 802 Coils Coil 332 359 - -
Cmo05g00647 802 Pfam Universal stress protein family 21 161 IPR006016 -
Cmo05g00647 802 MobiDBLite consensus disorder prediction 67 86 - -
Cmo05g00647 802 Gene3D Transferase(Phosphotransferase) domain 1 571 779 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00439 Cmo-Chr5:2045072 Cmo05g00647 Cmo-Chr5:3265098 0 dispersed
Cmo05g00647 Cmo-Chr5:3265098 Cmo11g01716 Cmo-Chr11:12161082 0 dispersed
Cmo01g01633 Cmo-Chr1:12395026 Cmo05g00647 Cmo-Chr5:3265098 0 wgd
Cmo12g00230 Cmo-Chr12:1521191 Cmo05g00647 Cmo-Chr5:3265098 0 wgd
Cmo05g00647 Cmo-Chr5:3265098 Cmo09g00527 Cmo-Chr9:2474861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74352 PF00069 Pkinase 2.20E-35 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00647 - - csv:101214468 1178.31