Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00668 ATGTATAACGGTATTGGGTTACAGACGCCGAGAGGGTCTGGCACTAATGGGTACATTCAGACAAACAAGTTCTTTGTGAGGCCGAAGACTGGAAAGGTTGCTGAAAACACCAGAGGATTCGATGAAGATCAGGGCACTGCTGGTGTTTCCAAGAAACCTAATAAAGATATTCTTGAACATGATCGCAAGCGTCAGATTGAGCTCAAACTTGTCATTCTTGAGGACAAGCTCACTGACCAAGGTTATACAGAGGATGAAATTTCTCAAAAGTTGAAGGAGGCTCGCGAGACTTTGGAAGCTGCTTCAGGTTCTGAGGAAAAAGATGGACCCTCCGCCATCGTACTTGCAGATAAGAAGGTTTCAGATACTCAGTCTCACCAAATTGCTGCAAGAAAGGAGGAGCAGATGAAAACATTGAGAGCTGCACTTGGGTTGAGTTCATCGAACGATAGTGAACAAGTTACAGAAGGGATTTCTGATCCAACAAGAAATAGAAGGGAGGGTCAAAATGCTGATATTAAGCGACATGAGAAGTCTGAGCATTCGTTTTTAGACAGAGAATTGAACTGGAAAAAGCATGGCTCTGAAGATCATAATGATGATAAGGGTGACAAAAAAAGGGTTTCAAAAGAGTTGAAAGGCCATCCGAAGGATAGAAGAAGGCCGAAGGATGATTCTTCTGATAACGATTCTGTTGGAGAGCATCATAAGGGAACCAAGAAGAATTTGAGAGATAATAGAAGGAATGATTCTGAAAGTGACTTTGAAAGTGATGATGACGATAAATACAAAACCTCAAGGAAGTCGAAGAAAAATAGAAGGCATGATAGTGACGTTTCTTCTGATACTGATTCTGGTGGAGAGCGCAAGGGAACCAAGAAGCACTTGAGAGATAATCGGAGAGATGCTCCTAAACGTGACCCAGACAGCAATTTTGACCAGAAATATGCCACCTCGAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGACGATTCTTTGGATACTGCTTCTGGTGAAGAGCGCAAGGGAACCATGAAGCACTTGAGAGATAGTCGGAGAGATGCTCCTGAACGTGACCCAGGCAGCAATTTTGACCAGAAACACCTCACCTCGAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGACGATTCTTCTGATACTGATTCTGGTGAAGAGCGCAAGGGAACCACGAAGCACTTGAGAGATAGTCGGAGAGATGCTCCTGAACGTGAGCTAGACAGCAATTTTGACCAGAAACACATCACCTCGAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGATGCTTCTTCTGATACTGATTCTGGTGGAGAGCACAAGGAAACCAAGAAGAGCTTGAAGAATAATCGAAGAGATCTTGAAAGTGATACCGACAGTGACATTGACAAGAAATACACCACCTCAAAGAAGCAGGAGAAAAACAAAAGTCGCGGTAGTGATGATTCTGATTCAGATAGTGGTGAGTTTGGGATGGGCAGCCACAGGAAAGGATCTGGTAGAGCTAAAAGTCAAAAGGTGATGAAGAAGCAAAGAGGCCGGAAACAGGAGTCCACGGATGAGTCCAATTCTGACAGTGGGATTGATGATAAAGGCAGGCAACTGAAGCACAAGAACCAGCATGGTAAAAGATATGGGGTAGATAGTGACAGCTCTGACCGTGACAGTTCTGATTCTGATGTAGGTCGAAACAAGAGCAAGCATCGATATCAAAGCAAACGTGCAGGAAAGAGCAGGGTAGATAGTGAATCCGATTCTGAAAAGTTAAGAAAACATCCTAAGAAAGATGTTGGTAGACGCAGACATGATACCGATAACGATGAAAGTGGTGATAACAGCTCTAGCAGTGATGAAATAGTGAAGTGGCGCAGAGATAGGAGGCATAATTCTGATGATAAATCTGAAGAAGAAGGTGAATATTTTGGTAAAAGTGGCAAGATAGCCACAAAAGGAACAATAGCTGCTAAAAGGAAACATGATGACAGTGATAAATCTGATGATAGCCAAGCAGTTGATAGAAAGGGCAATGATAAACAGAAGAGAGCTAAGAAACATTCGTCTGGTGATGGTTCTGATGCAGATAAGGGAGTAAAATCAAGTGGTGGAGCTCGTGAAAGAGGAAAAGGGAGCTCGAATCATGCAGATGGTTTGGATGAGTCTGTGACAGCAGCTAAGAATACTTCGTACAAGTCTAGGAATGATCCACTCGATGAGTTCAACCGTGCAAATCAACAGACAATGAAAAGCAAGAGAAAGTTAGATGAAGGTGGTGAAGATGAGCAGCAGCCAGAAGCAAAGTCTCGAAGTCGAATTTCTACAAGAGAGTCAGATTTCCATGGAGACCCCAAGAAAGATTTCAAAAATGATTCTGAATCAAGTAGACGAGCACGAAGTGGTAGGTACGAAGAGACGAGGGATGGCAGGTACAGGGAGGACCCCAAAATTGATTCTGAATCAAACGCTAGATCACGCTATAGTGCACACAACGAGGATAATGACAGAAAGTCGACTCGAACAGGAAGCAGATATACTGAAGAAACAGAGCATGGAAGTAGACATAATCACAAGGCTAATGAGTCTCACCACCGCAGTAGGACTGATCAAGATATTGAAGAGGGAAAAAGGCACAGCAGCAGCAGATATGAGGAGCATAGAGGGAGAAAGCATGAAAGAGATGAGGGTATAAAATCTAGCAGGGAAGCTGAAAGAGGGGAGTATCAACCAAGCAGCAGGCTGAGATCTGAGAAAGATTATGAAACTAAAGAATCTACAAGAGATAGGGATGATCCCAGAAAGAGGGCCAAATATGATTCTCGATCAAGCAGACGTGATACGTCGTATTAG 2868 43.17 MYNGIGLQTPRGSGTNGYIQTNKFFVRPKTGKVAENTRGFDEDQGTAGVSKKPNKDILEHDRKRQIELKLVILEDKLTDQGYTEDEISQKLKEARETLEAASGSEEKDGPSAIVLADKKVSDTQSHQIAARKEEQMKTLRAALGLSSSNDSEQVTEGISDPTRNRREGQNADIKRHEKSEHSFLDRELNWKKHGSEDHNDDKGDKKRVSKELKGHPKDRRRPKDDSSDNDSVGEHHKGTKKNLRDNRRNDSESDFESDDDDKYKTSRKSKKNRRHDSDVSSDTDSGGERKGTKKHLRDNRRDAPKRDPDSNFDQKYATSRKHKKNRRHDSDDSLDTASGEERKGTMKHLRDSRRDAPERDPGSNFDQKHLTSRKHKKNRRHDSDDSSDTDSGEERKGTTKHLRDSRRDAPERELDSNFDQKHITSRKHKKNRRHDSDASSDTDSGGEHKETKKSLKNNRRDLESDTDSDIDKKYTTSKKQEKNKSRGSDDSDSDSGEFGMGSHRKGSGRAKSQKVMKKQRGRKQESTDESNSDSGIDDKGRQLKHKNQHGKRYGVDSDSSDRDSSDSDVGRNKSKHRYQSKRAGKSRVDSESDSEKLRKHPKKDVGRRRHDTDNDESGDNSSSSDEIVKWRRDRRHNSDDKSEEEGEYFGKSGKIATKGTIAAKRKHDDSDKSDDSQAVDRKGNDKQKRAKKHSSGDGSDADKGVKSSGGARERGKGSSNHADGLDESVTAAKNTSYKSRNDPLDEFNRANQQTMKSKRKLDEGGEDEQQPEAKSRSRISTRESDFHGDPKKDFKNDSESSRRARSGRYEETRDGRYREDPKIDSESNARSRYSAHNEDNDRKSTRTGSRYTEETEHGSRHNHKANESHHRSRTDQDIEEGKRHSSSRYEEHRGRKHERDEGIKSSREAERGEYQPSSRLRSEKDYETKESTRDRDDPRKRAKYDSRSSRRDTSY 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3390937 3395021 - CmoCh05G006680.1 Cmo05g00668 382803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00668 955 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 1 532 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 1 20 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 752 955 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 434 499 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 118 955 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 141 158 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 124 138 - -
Cmo05g00668 955 Coils Coil 84 104 - -
Cmo05g00668 955 Pfam cwf21 domain 58 99 IPR013170 -
Cmo05g00668 955 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 1 532 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 36 55 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 159 318 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 325 369 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 625 651 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 661 721 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 519 574 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 723 738 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 378 422 - -
Cmo05g00668 955 MobiDBLite consensus disorder prediction 583 617 - -
Cmo05g00668 955 Gene3D - 58 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00668 K13172 SRRM2, SRM300; serine/arginine repetitive matrix protein 2 - csv:101212545 921.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00233 Cmo-Chr12:1532338 Cmo05g00668 Cmo-Chr5:3390937 4.89E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g265 . . . . . . . . Cmo05g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00585 Cpe11g00563 . . . . . . . . Cla08g01279 Cam08g1737 Cec08g1319 Cco08g1440 Clacu08g1434 . Cre08g1221 . Csa02g02337 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005994 2 3 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00668 Cmo_Chr05 FPKM 6.849017 6.216627 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0