Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00672 | ATGAAGGAGCTCGATATCTTCACTTCATATTCCTTAAGTGGTTTCTTAAGCTTCTGCTACTCCTGTCACAAGAAACTGGAAGAGGGAAAAGACATCTATACTTATAGAGCTAGAGCTTACGTGTTGAAGATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTTTCATCGAGCACGGGAACAACTGGACCTAGTGCTGGTTCAAAGTCAGAAGAGCAGCGCTCTGCTGTGGCTCTTCAGTCTGAATTTAATAAGAGGGCTTCCAAGGTTGGATTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACCTTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAGTTTAAAGAAGTTCTAACCATGCGAACTGAAGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACCAATCCTTTTGTGCGCCAGCGTCCATTAGCTTCCAGGTCAGCTGCTGGTGCCTCAAGTGCGCCCCCTCCTCCATGGGCCAAGGCGTCCACATCTTTTTCTAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAGCAACAGCAGCAGATGGTTCCGTTACAAGACACTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCCACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGACGAGAACATGGACGATACTCTGTCAAATGTGGAGGGGGCACAGGGAGCATTGCTCAAGTCAGAAAGAGATTGGTCCTTGAGTGCAAGGGCAAAGATTTCATCTGGCAGAAAGAGATTGGTCCTTGAGTGCAAGGGCAAAGATTTCATCGGGTTCAAGTTTCTTCTGCTTCTTTCTGCTGTGTAA | 1170 | 44.62 | MKELDIFTSYSLSGFLSFCYSCHKKLEEGKDIYTYRARAYVLKMAVKTAQSFRDRTLEFQNITERLKKSFSSSTGTTGPSAGSKSEEQRSAVALQSEFNKRASKVGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTEVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKSERDWSLSARAKISSGRKRLVLECKGKDFIGFKFLLLLSAV | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3406264 | 3415262 | + | CmoCh05G006720.1 | Cmo05g00672 | 382807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00672 | 389 | SMART | tSNARE_6 | 282 | 349 | IPR000727 | - | |
Cmo05g00672 | 389 | ProSitePatterns | Syntaxin / epimorphin family signature. | 293 | 332 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cmo05g00672 | 389 | SUPERFAMILY | t-snare proteins | 95 | 342 | IPR010989 | GO:0016020|GO:0016192 | |
Cmo05g00672 | 389 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 49 | 68 | IPR021538 | - | |
Cmo05g00672 | 389 | Pfam | zinc-finger of the FCS-type, C2-C2 | 11 | 36 | IPR007650 | - | |
Cmo05g00672 | 389 | PANTHER | SYNTAXIN-32-LIKE | 50 | 349 | - | - | |
Cmo05g00672 | 389 | PANTHER | SYNTAXIN | 50 | 349 | IPR045242 | - | |
Cmo05g00672 | 389 | MobiDBLite | consensus disorder prediction | 70 | 90 | - | - | |
Cmo05g00672 | 389 | MobiDBLite | consensus disorder prediction | 211 | 230 | - | - | |
Cmo05g00672 | 389 | MobiDBLite | consensus disorder prediction | 247 | 283 | - | - | |
Cmo05g00672 | 389 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 287 | 349 | IPR000727 | - | |
Cmo05g00672 | 389 | CDD | SNARE_syntaxin5 | 290 | 348 | - | - | |
Cmo05g00672 | 389 | Gene3D | - | 93 | 342 | - | - | |
Cmo05g00672 | 389 | MobiDBLite | consensus disorder prediction | 211 | 283 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00672 | Cmo-Chr5:3406264 | Cmo12g00251 | Cmo-Chr12:1632489 | 2.66E-11 | dispersed | |
Cmo01g01590 | Cmo-Chr1:12204379 | Cmo05g00672 | Cmo-Chr5:3406264 | 8.62E-06 | wgd | |
Cmo12g00252 | Cmo-Chr12:1636967 | Cmo05g00672 | Cmo-Chr5:3406264 | 8.48E-174 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00672 | K08490 | - | csv:101203633 | 489.96 |