Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00672 ATGAAGGAGCTCGATATCTTCACTTCATATTCCTTAAGTGGTTTCTTAAGCTTCTGCTACTCCTGTCACAAGAAACTGGAAGAGGGAAAAGACATCTATACTTATAGAGCTAGAGCTTACGTGTTGAAGATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTTTCATCGAGCACGGGAACAACTGGACCTAGTGCTGGTTCAAAGTCAGAAGAGCAGCGCTCTGCTGTGGCTCTTCAGTCTGAATTTAATAAGAGGGCTTCCAAGGTTGGATTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACCTTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAGTTTAAAGAAGTTCTAACCATGCGAACTGAAGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACCAATCCTTTTGTGCGCCAGCGTCCATTAGCTTCCAGGTCAGCTGCTGGTGCCTCAAGTGCGCCCCCTCCTCCATGGGCCAAGGCGTCCACATCTTTTTCTAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAGCAACAGCAGCAGATGGTTCCGTTACAAGACACTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCCACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGACGAGAACATGGACGATACTCTGTCAAATGTGGAGGGGGCACAGGGAGCATTGCTCAAGTCAGAAAGAGATTGGTCCTTGAGTGCAAGGGCAAAGATTTCATCTGGCAGAAAGAGATTGGTCCTTGAGTGCAAGGGCAAAGATTTCATCGGGTTCAAGTTTCTTCTGCTTCTTTCTGCTGTGTAA 1170 44.62 MKELDIFTSYSLSGFLSFCYSCHKKLEEGKDIYTYRARAYVLKMAVKTAQSFRDRTLEFQNITERLKKSFSSSTGTTGPSAGSKSEEQRSAVALQSEFNKRASKVGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTEVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKSERDWSLSARAKISSGRKRLVLECKGKDFIGFKFLLLLSAV 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3406264 3415262 + CmoCh05G006720.1 Cmo05g00672 382807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00672 389 SMART tSNARE_6 282 349 IPR000727 -
Cmo05g00672 389 ProSitePatterns Syntaxin / epimorphin family signature. 293 332 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo05g00672 389 SUPERFAMILY t-snare proteins 95 342 IPR010989 GO:0016020|GO:0016192
Cmo05g00672 389 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 49 68 IPR021538 -
Cmo05g00672 389 Pfam zinc-finger of the FCS-type, C2-C2 11 36 IPR007650 -
Cmo05g00672 389 PANTHER SYNTAXIN-32-LIKE 50 349 - -
Cmo05g00672 389 PANTHER SYNTAXIN 50 349 IPR045242 -
Cmo05g00672 389 MobiDBLite consensus disorder prediction 70 90 - -
Cmo05g00672 389 MobiDBLite consensus disorder prediction 211 230 - -
Cmo05g00672 389 MobiDBLite consensus disorder prediction 247 283 - -
Cmo05g00672 389 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 287 349 IPR000727 -
Cmo05g00672 389 CDD SNARE_syntaxin5 290 348 - -
Cmo05g00672 389 Gene3D - 93 342 - -
Cmo05g00672 389 MobiDBLite consensus disorder prediction 211 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00672 Cmo-Chr5:3406264 Cmo12g00251 Cmo-Chr12:1632489 2.66E-11 dispersed
Cmo01g01590 Cmo-Chr1:12204379 Cmo05g00672 Cmo-Chr5:3406264 8.62E-06 wgd
Cmo12g00252 Cmo-Chr12:1636967 Cmo05g00672 Cmo-Chr5:3406264 8.48E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00672 K08490 - csv:101203633 489.96