Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00674 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCGTACCCTTTATTAATGGCACAACCAGAAAATTCTAACAGCAGTGAGCATATCATTGACGTAACTGGTACTGGTGATTCTACCCCCTCTAGTTTACCTCATGGTAGGAATTCAAATGGCTTAAATTTATCACAACCTGAAGATAGACCTTCAAGTAGTACACAAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGGAATTCTTCATTCATAAGAAGAGGAGATGCGCGACGGCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAACGAAAAACCTCGTGCACCTTTGTTTGCGTGGATTGTGGGATATGCATCTGGGTGTGGTGCCACCCTTCCTCTCCTCTATTGGCGTTATCGACACCACAATCAAGCTTCAGAACAAGGTTCTCTTCAGTCCAGCCAGAATTCTTCTCGCATTAATGCTCCTGCTGGGCCATTCTCTCTTTCTGTTTCTAGGGCGTCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCCCCTAGAGGCAGTCAAGGGTCAGGAGTAGTAACAGGAAGATTTAAAGTTTTGGTTGAATATTTGAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCCGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTACGCCATGCCTTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCATGTATAATTTCCATCCTTGGGTTTAGAGAGGAGTTTACACAGACCCGAGGAGCCACAGCAGAATCTATTAATGCTTTACCAGCTTATAAATTTAAGCTGAAGAAAAGCAGAAGCGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATCTCTGGAGAAGATGCTGTCTGTTGCATTTGCTTAGCAAAATACGCCAACAATGATGAACTGAGAGAGCTGCCATGTTCTCACTTTTTTCACAAGGACTGTGTAGATAAATGGTTGAAAATCAATGCACTGTGCCCACTGTGCAAAACCGAGGTCGGTGAGAGTATCATCAGCTCTCTTGATGGGGCTAATAGACAACAGGGTGATTCTTGA 1278 43.58 MDVPSVELNCESEGDSYPLLMAQPENSNSSEHIIDVTGTGDSTPSSLPHGRNSNGLNLSQPEDRPSSSTQVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHHNQASEQGSLQSSQNSSRINAPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVVTGRFKVLVEYLKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREEFTQTRGATAESINALPAYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIISSLDGANRQQGDS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3421231 3424107 - CmoCh05G006740.1 Cmo05g00674 382809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00674 425 CDD RING-H2_RNF111_like 362 404 - -
Cmo05g00674 425 SMART ringv_2 362 404 IPR011016 GO:0008270
Cmo05g00674 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cmo05g00674 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cmo05g00674 425 MobiDBLite consensus disorder prediction 1 96 - -
Cmo05g00674 425 Pfam Ring finger domain 363 404 IPR001841 -
Cmo05g00674 425 SMART ring_2 363 403 IPR001841 -
Cmo05g00674 425 MobiDBLite consensus disorder prediction 21 90 - -
Cmo05g00674 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
Cmo05g00674 425 SUPERFAMILY RING/U-box 355 409 - -
Cmo05g00674 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00674 Cmo-Chr5:3421231 Cmo09g01027 Cmo-Chr9:5491616 2.69E-55 dispersed
Cmo12g00254 Cmo-Chr12:1650074 Cmo05g00674 Cmo-Chr5:3421231 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00674 - - csv:101211818 778.474