Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00680 ATGTCTGATGAAGATCTTCCTCCCGCAAGCCAATTGATTCCTTTGGACTTCAGCTCAGTTCAAACTATTCCTGAATCTCACTTATGGCCTAACCTTGATGAATCATCGAGGAAGATCGAACCTGACAAAATGATCTCGATCCCGGTTGTCGATCTTAACGACGATAATGTGTCGGAGCTCATAGGGAAAGCCTGTGAGAAGTGGGGAATGTTTCAGTTGATTAATCATGGTATCTCAAAAACCCTAATAACCGAAACCGAGGAAGTGGCTCGATGTCTTTTTGCTCTTCCAAAAAGCCAGAAGATGAAGACATTACAGTCTCCCGAAACCCCCACCGGCTACAGCATGGCCGGAATATCGAAGTATTATGAGAAACTAATGTGGCACGAAGGATTCACCATCCTAGATTCTCCGGTTGATGGTTTTAAGAAACTCTGGCCATCAGACTACCAACGGTTCTGTGATATAATGGAAGAATACCGACTCAAAATGAAGGCTTTAGCTGATAAGCTAATAAGGTTAATCTTCAAGTTTCTTGGCATCTCCGATGAAGAGATAGTGAAGCTATTGTCTTACATCGACCCAACCACCGGAAAACCCCACATGGCTTTGCGCTTGAACTCGTATCCGCCATGCCCTGATCCAAGCAAAGTCATTGGCCTCGCGGCCCACACTGACACCTCTCTCTTCACTATGCTTCACCAGGCACGCAAATATGGGCTACAAATCTTCAACGAGAAAGAAGGCCTTTTGACTCCTCTGGACCTCAGCACAGTTGACGCTGTTCCTGAATCTCACGTATGGCCTCACCTCGATGAATCATCGCAGAAGTTCGAATCAGACAAAACGGTCTCGATCCCAGTTGTCGATTTTAACGACGACAATGTGTTGGAGCTCATAGGGAAAGCCTGCGAGGAGTGGGGAATGTTTCAGTTGATTAATCATGGTATCCCGAAAACCCTAACAGCCGAAACTGAGGAGGTGGCTCGATGTCTTTTCGCTCTTCCACAAAGCCAAAAGATGAAGGCATTAAATGTTCCTGGAACAGCCAATGGCTACTGCATGGCCAGATTAACAAAGCATCATGACAAAATGATGTGGCATGAAGGATTCACCGTCATAGGTTCTCCGGTTGATGATTTTAAGAAACTTTGGCCATCGAACTACCAACGGTTCTGGTAA 1182 45.6 MSDEDLPPASQLIPLDFSSVQTIPESHLWPNLDESSRKIEPDKMISIPVVDLNDDNVSELIGKACEKWGMFQLINHGISKTLITETEEVARCLFALPKSQKMKTLQSPETPTGYSMAGISKYYEKLMWHEGFTILDSPVDGFKKLWPSDYQRFCDIMEEYRLKMKALADKLIRLIFKFLGISDEEIVKLLSYIDPTTGKPHMALRLNSYPPCPDPSKVIGLAAHTDTSLFTMLHQARKYGLQIFNEKEGLLTPLDLSTVDAVPESHVWPHLDESSQKFESDKTVSIPVVDFNDDNVLELIGKACEEWGMFQLINHGIPKTLTAETEEVARCLFALPQSQKMKALNVPGTANGYCMARLTKHHDKMMWHEGFTVIGSPVDDFKKLWPSNYQRFW 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3450069 3455678 + CmoCh05G006800.1 Cmo05g00680 382815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00680 393 Pfam non-haem dioxygenase in morphine synthesis N-terminal 286 387 IPR026992 -
Cmo05g00680 393 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 147 IPR026992 -
Cmo05g00680 393 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 257 391 - -
Cmo05g00680 393 SUPERFAMILY Clavaminate synthase-like 14 248 - -
Cmo05g00680 393 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 257 391 - -
Cmo05g00680 393 Pfam 2OG-Fe(II) oxygenase superfamily 201 251 IPR044861 -
Cmo05g00680 393 Gene3D - 254 393 IPR027443 -
Cmo05g00680 393 Gene3D - 10 253 IPR027443 -
Cmo05g00680 393 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 219 228 IPR001261 -
Cmo05g00680 393 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 247 - -
Cmo05g00680 393 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 9 247 - -
Cmo05g00680 393 SUPERFAMILY Clavaminate synthase-like 254 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00680 K04124 GA3ox; gibberellin 3beta-dioxygenase [EC:1.14.11.15] - csv:101222387 358.221
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00680 Cmo-Chr5:3450069 Cmo05g00683 Cmo-Chr5:3469235 7.03E-71 dispersed
Cmo05g00679 Cmo-Chr5:3443986 Cmo05g00680 Cmo-Chr5:3450069 7.00E-40 tandem
Cmo05g00680 Cmo-Chr5:3450069 Cmo05g00681 Cmo-Chr5:3455838 9.60E-52 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g431 . . . . . . . . Cmo05g00680 . . Cma05g00649 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01291 . . . . . . . . Cpe11g00573 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002692 0 1 0 0 0 2 0 2 1 2 1 2 6 1 1 6 2 0 10 2 1 1 6 1 1 1 1 4 1 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00680 Cmo_Chr05 FPKM 0.729022 1.228322 0.295662 0.0 2.079762 2.25964 2.474472 0.0 0.0 0.0