Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00686 ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATATGAAGGCTACTGCTCAGGCTTTCCAAGCAGAGGGAAAAGTCTCTTCGGAGCCTGTGGCAATCGATGCGCCTGGAGGCTTTCTTTTCGAATGGTGGTCGGTTTTCTGGGATATATTCATTGCTAGAACCAATGAGAAACACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCTAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAGCAAACACAGCCACAACAACAGCAACCGCAGCACATGCAGATGCTACTGATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAACAACAGCAACAGCATCAACAGCAACAGCAGCCACAGCAGCAACAACAACAGACTCAGCAACAGCAACAGCAGCGGAGAGATGGAGCCCAACTCTTAAATGGTACTTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGCCAAAATCCCGGTTCTGTGAATGCATTGGCTACAAAAATGTATGAGGACAGATTAAAACTGCCCCTTCAGAGGGATTCACTCGATGATGCGGCTATGAAACAAAGGTATGGGGAAAATGTTGGGCAGCTGTTAGATCCAAATCATGCTTCGATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCGTCAGGGCAAGTGTTACATGGTACAGCTGGGGGAATGTCTCCTCAAGTTCAATCGAGGAGCCAACAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGAGGGATCACTGATGGGTATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGACTCGAGCAGCTACGTTCTGGGATCCTTCAGCAACCGAAACCTTTCATACAGGCTCCTCAACCTTTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACGCCACCTTCTGTTAACGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGACGAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCCTGCCCCGTGGAGACAACAGTGACATGATGATTAAGATTAAAATGGCTCAATTGCAGCAGCAACAACAGAATAGCAGCCAACAACAACAACAACAACAACAGCATTCTCTTTCAAATCAACAATCACAAAGCTCAAACCACAATATGCACCAGCAAGAAAAAATCGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGACAAACTCATTTCGTGGAAATGATCAGGTTTCAAAAAATCAGCCTGGGAGAAAAAGGAAGCAGCCATTGTCGTCTTCAGGTCCAGCAAATAGCTCAGGAACAGCGAATACAGCAGGTCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGTAGCGACGGCACTGGCACTTTTACATCCCCCTCGAATCAGTTGTGGGATGATAAAGAAATTGAATTGCAGGCTGATATGGAACGCTTTGTGGAGGATGGGTCTCTTGATGACAACGTCGACTCTTTTTTATCCCATGATGATACGGACCCTCGAGATCCTGTAGGGCGCTGTATGGATGGTGGAAAAGGATTCACGTTTACGGAGGTGAATTCTGTTCGAGCAAGCACGAGCAAAGTTTCAGCTTGCCACTTTTCATCGGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCCGTGTTGTGGTACACAGAAAATTTAAAACCGAAAACTTCACTTGAAGAACATCTTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGTCTCGCAACATCATCGTTTGATCGAACAGTCAGGGTTTGGGATCCCGACAATCATTGTTATTCCCTACGTACTTTTACGGGACATTCTGCATCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGACGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGGGACACACCAAAACGGTTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCGGTTCGAGTATGGACACTTGCTTCGGGCAACGAGGGCGAATCCATTCACGACTTGAGCTGTAGCGGCAATAAGTTCCACTCGTGCGTTTTTCATCCCATCCAATCTAGTTTACTGGTCATTGGATGTTACCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTTGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAA 2688 45.87 MSQTNWEADKMLDVYIHDYLVKRDMKATAQAFQAEGKVSSEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGTSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGTAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQPKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLTPPSVNDDGRRLRMLLNSRMTKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDNSDMMIKIKMAQLQQQQQNSSQQQQQQQQHSLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMTNSFRGNDQVSKNQPGRKRKQPLSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKEIELQADMERFVEDGSLDDNVDSFLSHDDTDPRDPVGRCMDGGKGFTFTEVNSVRASTSKVSACHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHLSMITDVRFSPSMPRLATSSFDRTVRVWDPDNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLSCSGNKFHSCVFHPIQSSLLVIGCYQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWK 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3497525 3503601 - CmoCh05G006860.1 Cmo05g00686 382821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00686 895 MobiDBLite consensus disorder prediction 408 450 - -
Cmo05g00686 895 Coils Coil 85 105 - -
Cmo05g00686 895 MobiDBLite consensus disorder prediction 370 551 - -
Cmo05g00686 895 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 895 - -
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 895 IPR001680 GO:0005515
Cmo05g00686 895 Pfam WD domain, G-beta repeat 775 808 IPR001680 GO:0005515
Cmo05g00686 895 Pfam WD domain, G-beta repeat 649 685 IPR001680 GO:0005515
Cmo05g00686 895 Pfam WD domain, G-beta repeat 693 729 IPR001680 GO:0005515
Cmo05g00686 895 Pfam WD domain, G-beta repeat 862 895 IPR001680 GO:0005515
Cmo05g00686 895 Pfam WD domain, G-beta repeat 611 642 IPR001680 GO:0005515
Cmo05g00686 895 Coils Coil 410 430 - -
Cmo05g00686 895 MobiDBLite consensus disorder prediction 457 517 - -
Cmo05g00686 895 CDD WD40 607 895 - -
Cmo05g00686 895 Pfam LisH 10 36 IPR006594 GO:0005515
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 734 - -
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 738 IPR001680 GO:0005515
Cmo05g00686 895 SMART Lish 8 40 IPR006594 GO:0005515
Cmo05g00686 895 Gene3D - 748 895 IPR015943 GO:0005515
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 652 IPR001680 GO:0005515
Cmo05g00686 895 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 895 IPR044716 GO:0003714
Cmo05g00686 895 MobiDBLite consensus disorder prediction 239 274 - -
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 685 - -
Cmo05g00686 895 MobiDBLite consensus disorder prediction 239 271 - -
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 685 IPR001680 GO:0005515
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Cmo05g00686 895 MobiDBLite consensus disorder prediction 525 551 - -
Cmo05g00686 895 Gene3D - 599 747 IPR015943 GO:0005515
Cmo05g00686 895 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Cmo05g00686 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 818 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 732 768 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 815 854 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 771 809 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 856 895 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 646 685 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 604 643 IPR001680 GO:0005515
Cmo05g00686 895 SMART WD40_4 689 729 IPR001680 GO:0005515
Cmo05g00686 895 SUPERFAMILY WD40 repeat-like 605 895 IPR036322 GO:0005515
Cmo05g00686 895 MobiDBLite consensus disorder prediction 89 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00686 - - - cpep:111805531 1400.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00686 Cmo-Chr5:3497525 Cmo06g01259 Cmo-Chr6:9502023 0 dispersed
Cmo12g00263 Cmo-Chr12:1693445 Cmo05g00686 Cmo-Chr5:3497525 0 transposed
Cmo12g00262 Cmo-Chr12:1691585 Cmo05g00686 Cmo-Chr5:3497525 4.20E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
Vvi11g402 . . . . Bpe01g00505 . . . . . Cma05g00654 . Car05g00598 . Sed08g0737 . Cpe18g00457 Bhi02g01088 Tan09g1333 Cmetu05g0271 . . . . . . . . . . . Cone2ag0275 Cone16ag0764 . . . . . Cme02g01301 . Blo14g00816 . . . . . . . Cmo05g00686 . Cma10g00591 . Car10g00546 . . . . . . . . . . Cla06g01040 Cam06g1163 Cec06g1202 Cco06g1207 Clacu06g1122 Cmu06g1095 Cre06g1902 . Csa01g02090 Chy02g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9833 PF00400 WD40 0.1 CL0186 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00686 Cmo_Chr05 FPKM 63.369564 72.133865 33.570511 31.173141 25.152246 25.689915 25.11441 43.041794 43.827129 42.057938