Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00703 ATGGCTTTTCTAGAGGTAAAACAGAAACTCCTACGCGAGATTGAAGATCTAGGATTCCCAAGGGCCCGAGCTGTCCGAGCACTTCATAGTACTGGGAATGTCAGCACTGAAGCTGCAATTAATTGGCTCATTGATCATGAGAATGATCCAGATATAGATCAAATGCCCCTGGTAGCAATAGAGATTGATATTGAATCTCCTGAACCATTTCATATCACAGAGGAAATGAAAAGAAAGGCTAAGGAACTAAGGGATCAAATACGGAAAGAAAAAGAAAAAGAAGAAAAAAAGTTAGAAAGACAGAGGGAGAAGGACAGAATTCGTTCTGGTAAAGAATTACAAGAAGCAAAAAGAACTGCAGAAGAAGCTGAACGGAAACGCTATATAGACTCTAGGCAAGCTGATAAACAGGAGGAGAAGAGAGCAAGGGAAAAAGTTCTACAAAAACTTCAACAAGATAAGATAGAAAGAAGGAGGAATAGTGGAATGCTCTCTGAAAGGTCAGAAAGCCTTGATACAAAATCTAACGCCACCGAAGCAGGGAAAAAGGATGAACTTAGATCGCAGAATTCACTGCCAGCAACTTCAGTTAGTAAAGCAGTTTCTATGAGAGAATGCTTAAGGTCTCTTAGGCGCCATCAAAAGGATGATTCTGATAAAGTGAGAACTGCCTACCGAACCCTCTTTATCTATGTCAGAAATGTAGCCAAAAATCCTGATGAGGAAAAGTTTAGGAAGATTCGACTCAGTAACCCTTTGTTCCAGGAGAGAGTTGGGAGTTTGAAAGGAGGGATAGAGTTTCTGGAGCTTTGCGGGTTTGAGAGAGGAGGAGAGTTTCTGTACCTTCCCCGGGATAAAGTCGACCGGGGGGCTTTAGTCACTGCTGGATCACTGTTAGAATCTGCAATGACAAATCCCTTTTTTGGTGCAATATAA 936 41.56 MAFLEVKQKLLREIEDLGFPRARAVRALHSTGNVSTEAAINWLIDHENDPDIDQMPLVAIEIDIESPEPFHITEEMKRKAKELRDQIRKEKEKEEKKLERQREKDRIRSGKELQEAKRTAEEAERKRYIDSRQADKQEEKRAREKVLQKLQQDKIERRRNSGMLSERSESLDTKSNATEAGKKDELRSQNSLPATSVSKAVSMRECLRSLRRHQKDDSDKVRTAYRTLFIYVRNVAKNPDEEKFRKIRLSNPLFQERVGSLKGGIEFLELCGFERGGEFLYLPRDKVDRGALVTAGSLLESAMTNPFFGAI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3606682 3611418 + CmoCh05G007030.1 Cmo05g00703 382838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00703 311 PANTHER UBX DOMAIN-CONTAINING PROTEIN 1-LIKE 1 310 - -
Cmo05g00703 311 PANTHER F13M7.16 PROTEIN 1 310 - -
Cmo05g00703 311 Pfam PUB domain 219 289 IPR018997 -
Cmo05g00703 311 CDD UBA_PUB_plant 5 53 - -
Cmo05g00703 311 Gene3D - 8 53 - -
Cmo05g00703 311 SMART PGNneu 223 284 - -
Cmo05g00703 311 MobiDBLite consensus disorder prediction 172 186 - -
Cmo05g00703 311 Pfam UBA/TS-N domain 11 43 IPR015940 -
Cmo05g00703 311 Coils Coil 73 126 - -
Cmo05g00703 311 Gene3D - 205 299 - -
Cmo05g00703 311 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Cmo05g00703 311 MobiDBLite consensus disorder prediction 90 165 - -
Cmo05g00703 311 MobiDBLite consensus disorder prediction 90 197 - -
Cmo05g00703 311 SUPERFAMILY PUG domain-like 200 307 IPR036339 -
Cmo05g00703 311 Coils Coil 133 156 - -
Cmo05g00703 311 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02213 Cmo-Chr4:16490883 Cmo05g00703 Cmo-Chr5:3606682 4.41E-08 dispersed
Cmo05g00703 Cmo-Chr5:3606682 Cmo15g01021 Cmo-Chr15:5989272 4.12E-08 dispersed
Cmo08g00933 Cmo-Chr8:6070593 Cmo05g00703 Cmo-Chr5:3606682 3.61E-112 transposed
Cmo12g01011 Cmo-Chr12:9458895 Cmo05g00703 Cmo-Chr5:3606682 2.39E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00703 - K24348 csv:101210384 476.863