Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00714 ATGCACTCCTTCGCCGGCGGCTGGGCTGCCGTCGCCACCGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCCGCTTTCCTCTGCCTTCGCTGTGACGCCCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGCCTCTGTGAGGTCTGCGAGCAAGCTCCTGCTACCATCACCTGCAATGCCGACGCCGCCTCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCCTCCGCCTCCGTTGCCTCTGTCTTCAAATTCCTCCTCCCGACTCAACACCAACATGACGTCGGCCACCCTGATTTGAAATCCGAGGACATCTTCTTCTCCGATATGGATTCGTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCCAATCCTGGAACAGAGTCCACTACGCAACCCGCCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTAGTACTCGATCTAACCTCGACGCCATTAGCTACCCATCTCATAATCTTAGCCATAGCGTCTCGTCGTCTTCCTTAGACGTGGTTGCTGTGCCAGATCGGAACACGGCCTCCGACGCGTCGTATCCAGCAGGACAGACAGCGCTTCCTACGACGGAGAAGGCGGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACAATTCGGTACGCTTCAAGGAAAGCTTATGCAGAAATTCGGCCAAGGGTTAAAGGGCGGTTCGTTAAACGGAGTGAAATGAAGTCGGAAATGGAGAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCGAGGGACGGCCAATACGGCGTCGTCCCAAGCCTTATAGTTTGA 981 56.57 MHSFAGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIHSHTTGTRHPRVCLCEVCEQAPATITCNADAASLCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVASVFKFLLPTQHQHDVGHPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSNLDAISYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQTALPTTEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPSLIV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3664111 3665411 + CmoCh05G007140.1 Cmo05g00714 382849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00714 326 CDD Bbox1_BBX-like 17 57 - -
Cmo05g00714 326 Pfam B-box zinc finger 15 50 IPR000315 GO:0008270
Cmo05g00714 326 Pfam B-box zinc finger 59 100 IPR000315 GO:0008270
Cmo05g00714 326 SMART bboxneu5 13 53 IPR000315 GO:0008270
Cmo05g00714 326 SMART bboxneu5 55 102 IPR000315 GO:0008270
Cmo05g00714 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 323 IPR045281 GO:0009909
Cmo05g00714 326 CDD Bbox1_BBX-like 59 102 - -
Cmo05g00714 326 Pfam CCT motif 251 293 IPR010402 GO:0005515
Cmo05g00714 326 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Cmo05g00714 326 ProSiteProfiles Zinc finger B-box type profile. 13 59 IPR000315 GO:0008270
Cmo05g00714 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 323 - -
Cmo05g00714 326 MobiDBLite consensus disorder prediction 162 176 - -
Cmo05g00714 326 MobiDBLite consensus disorder prediction 155 176 - -
Cmo05g00714 326 ProSiteProfiles CCT domain profile. 251 293 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00714 Cmo10g00449 CCT
Cmo05g00714 Cmo11g00414 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00714 Cmo-Chr5:3664111 Cmo12g00329 Cmo-Chr12:2050764 1.49E-74 dispersed
Cmo10g00449 Cmo-Chr10:2020058 Cmo05g00714 Cmo-Chr5:3664111 8.83E-100 wgd
Cmo10g00449 Cmo-Chr10:2020058 Cmo05g00714 Cmo-Chr5:3664111 8.83E-100 wgd
Cmo11g00414 Cmo-Chr11:2033089 Cmo05g00714 Cmo-Chr5:3664111 2.94E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9834 PF06203 CCT 1.60E-17 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00714 - - cmax:111492359 632.098