Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00725 ATGATGGGATCTTTAGTGGTGGCGGAATACAAGGTGTCCTTTCTTGGTGCTATTTTCGACTCGCCGAAATGTAGTAAGTTGAGTATGCAAGAGAAGAGAGAACTTGTTTATGAAATTTCGAGGTCACACGGTGCGTGTGAGAAACTGCAGTCATGGAGTCGTCAAGACATTCTACAAGTGCTGTGTGCAGAGATGGGGAAAGAAAGGAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTTGTATCCGAAAACAAGTCATCGGTGCCTGAGGTTTCGAAAAACATTGAGCCACAGTCTCCTGCAAGTGGCCATAAAACTACCAAAAGGCAGAGGAAATCCGATCATCTAGTTCCTACAAGTGACTTTCCGAGCACTAGTTCTCATAATGATTCGGGTCATACCGTGAGCTGCAAGAACTTGGCTTGTCGAGCGACTCTAAATCCAGAAGATACGTTTTGTAGAAGGTGTTCTTGCTGCATCTGTCGTCAGTATGACGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCGTTTCAAGGTGACTCGTGCAACATGTCGTGTCATCTCGAATGTGCTTTAAAAGATGAAAGATCGGGCATTTTGAAAGCCGGACAAAGCAGGGGAGTTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAACTAAACGATTTGCTTGGGTGCTGCAGAAAGCAACTAGTTCATGCGAAAGAAACACGAAGGGTCGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAGGTATAAAGTGCTTTATCAGATTGTTGATGAATCAGTGAAGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGTGCACCGGTAAAGATGGGTCGAGGTATCGTAAACAGGCTTTTATCTGGACCCGACGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTCGATTCGATGCTCTCCAGCAAATCCTTACATATTGTGCCTAATCCTGACATTCAAGATGCAAGTTTTGTTCCGACAAACATGGTTCGATTCGAAGATGTTCGGTCGACATCCCTCACTCTGGTTTTGAGTTGTGAATATGGATCATCCTCTGAGAACCGGGTCGGCTTCACGTTATGGCATCGTAAGGCGGATGATGCAGATTATCCAACAGAACCAACATATATTCTACAACAACCGAAGGCGAGGTGTGTCGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTTTGTTTGAAGGGACAAGGGAGTTGAGGGAGTTTGAAGTTCAATTCTCAACAATTAGGGAGGTAGAAGAGAACCCAGGTTGTTTAGAAATTGAGAGAAGCCAAAGCCATGCAACCAACTGTAGCGACCTTTCGAATCCTTCTTCGGTTGAAGACGAAACTACTGACATTCTTCCCTATAGTGATCGAACCGATAACGTAGGAAAGAACTCGACCGCCCATTCAAAGGGCACGGAAATGCATTCCTCTGCTATTTTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACGGCAGCAGGAACAGTACCTGTGCTGGATGAGGCAAATGCTGCTGGAATTGTATGTTTGATTCCAAACTCTGTCGGATCAAAGCTCGAGAACAGGCATGGATCATCTGCGCCGAAACTCAACACCAATAATCAATTAGGCGCTCTGGTTCGGTCTGGAATGGAGCGCCAGCCGTTCGTTGGCTGTTCTGAAGATGGCTTGCCTATTACACCCTGCAAGCTTGAAGTGCTAAAGGACAGTCTTGGTAGGGGTGAGAGACTGGAATCCAACTGCAAGGACGTTGACAACAGGACTCGAAAAGGTGGGGAACCTCAAGACGGTGGCACGTCGAAGATGCGAACTGGGGAAAGACAGGACGATAAATGTACTGAAAATGGTGTTTCGGATCGGGATTTTGAACACTATGTGAAGGTTATTAGATGGTTAGAGTGCGAAGGACATATCGAAAAAAATTTCAGACAGAAGTTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAAGTGTTTGTGGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCGGAATGCATATCGAGCAAAAAACCGACGACGACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2217 45.11 MMGSLVVAEYKVSFLGAIFDSPKCSKLSMQEKRELVYEISRSHGACEKLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSENKSSVPEVSKNIEPQSPASGHKTTKRQRKSDHLVPTSDFPSTSSHNDSGHTVSCKNLACRATLNPEDTFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGILKAGQSRGVDGSFYCVSCGKLNDLLGCCRKQLVHAKETRRVDILCYRVSLSQKLLHGTERYKVLYQIVDESVKKLEAEVGPIAGAPVKMGRGIVNRLLSGPDVQKLCASAIELLDSMLSSKSLHIVPNPDIQDASFVPTNMVRFEDVRSTSLTLVLSCEYGSSSENRVGFTLWHRKADDADYPTEPTYILQQPKARCVVMGLSPATEYHFKIVLFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYSDRTDNVGKNSTAHSKGTEMHSSAILSTDAFNLSDNGEEGTAAGTVPVLDEANAAGIVCLIPNSVGSKLENRHGSSAPKLNTNNQLGALVRSGMERQPFVGCSEDGLPITPCKLEVLKDSLGRGERLESNCKDVDNRTRKGGEPQDGGTSKMRTGERQDDKCTENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTTPPGFCMKLWH 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3770367 3773902 + CmoCh05G007250.1 Cmo05g00725 382860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00725 738 MobiDBLite consensus disorder prediction 461 502 - -
Cmo05g00725 738 ProSiteProfiles Fibronectin type-III domain profile. 347 447 IPR003961 GO:0005515
Cmo05g00725 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 738 IPR044514 GO:0010048|GO:0040029
Cmo05g00725 738 MobiDBLite consensus disorder prediction 610 646 - -
Cmo05g00725 738 CDD FN3 348 423 IPR003961 GO:0005515
Cmo05g00725 738 MobiDBLite consensus disorder prediction 94 110 - -
Cmo05g00725 738 SUPERFAMILY Fibronectin type III 352 424 IPR036116 GO:0005515
Cmo05g00725 738 MobiDBLite consensus disorder prediction 94 140 - -
Cmo05g00725 738 MobiDBLite consensus disorder prediction 123 140 - -
Cmo05g00725 738 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Cmo05g00725 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 738 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00725 - - - csv:101222501 1276.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00725 Cmo-Chr5:3770367 Cmo12g00159 Cmo-Chr12:1030868 1.90E-16 dispersed
Cmo10g00421 Cmo-Chr10:1924845 Cmo05g00725 Cmo-Chr5:3770367 0 wgd
Cmo11g00383 Cmo-Chr11:1911728 Cmo05g00725 Cmo-Chr5:3770367 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g380 . . . . . . . . Cmo05g00725 . . Cma05g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00638 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00421 CST 5 473 PHD Gene Family AT4G30200 53.2 3.3e-133 473.0
Cmo05g00725 . 16 475 PHD Gene Family AT4G30200 53.8 5.0e-129 459.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00725 Cmo_Chr05 FPKM 22.080654 24.929253 17.625216 18.23584 22.382795 18.572544 23.003332 23.492947 23.616735 26.376602