Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00725 ATGATGGGATCTTTAGTGGTGGCGGAATACAAGGTGTCCTTTCTTGGTGCTATTTTCGACTCGCCGAAATGTAGTAAGTTGAGTATGCAAGAGAAGAGAGAACTTGTTTATGAAATTTCGAGGTCACACGGTGCGTGTGAGAAACTGCAGTCATGGAGTCGTCAAGACATTCTACAAGTGCTGTGTGCAGAGATGGGGAAAGAAAGGAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTTGTATCCGAAAACAAGTCATCGGTGCCTGAGGTTTCGAAAAACATTGAGCCACAGTCTCCTGCAAGTGGCCATAAAACTACCAAAAGGCAGAGGAAATCCGATCATCTAGTTCCTACAAGTGACTTTCCGAGCACTAGTTCTCATAATGATTCGGGTCATACCGTGAGCTGCAAGAACTTGGCTTGTCGAGCGACTCTAAATCCAGAAGATACGTTTTGTAGAAGGTGTTCTTGCTGCATCTGTCGTCAGTATGACGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCGTTTCAAGGTGACTCGTGCAACATGTCGTGTCATCTCGAATGTGCTTTAAAAGATGAAAGATCGGGCATTTTGAAAGCCGGACAAAGCAGGGGAGTTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAACTAAACGATTTGCTTGGGTGCTGCAGAAAGCAACTAGTTCATGCGAAAGAAACACGAAGGGTCGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAGGTATAAAGTGCTTTATCAGATTGTTGATGAATCAGTGAAGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGTGCACCGGTAAAGATGGGTCGAGGTATCGTAAACAGGCTTTTATCTGGACCCGACGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTCGATTCGATGCTCTCCAGCAAATCCTTACATATTGTGCCTAATCCTGACATTCAAGATGCAAGTTTTGTTCCGACAAACATGGTTCGATTCGAAGATGTTCGGTCGACATCCCTCACTCTGGTTTTGAGTTGTGAATATGGATCATCCTCTGAGAACCGGGTCGGCTTCACGTTATGGCATCGTAAGGCGGATGATGCAGATTATCCAACAGAACCAACATATATTCTACAACAACCGAAGGCGAGGTGTGTCGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTTTGTTTGAAGGGACAAGGGAGTTGAGGGAGTTTGAAGTTCAATTCTCAACAATTAGGGAGGTAGAAGAGAACCCAGGTTGTTTAGAAATTGAGAGAAGCCAAAGCCATGCAACCAACTGTAGCGACCTTTCGAATCCTTCTTCGGTTGAAGACGAAACTACTGACATTCTTCCCTATAGTGATCGAACCGATAACGTAGGAAAGAACTCGACCGCCCATTCAAAGGGCACGGAAATGCATTCCTCTGCTATTTTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACGGCAGCAGGAACAGTACCTGTGCTGGATGAGGCAAATGCTGCTGGAATTGTATGTTTGATTCCAAACTCTGTCGGATCAAAGCTCGAGAACAGGCATGGATCATCTGCGCCGAAACTCAACACCAATAATCAATTAGGCGCTCTGGTTCGGTCTGGAATGGAGCGCCAGCCGTTCGTTGGCTGTTCTGAAGATGGCTTGCCTATTACACCCTGCAAGCTTGAAGTGCTAAAGGACAGTCTTGGTAGGGGTGAGAGACTGGAATCCAACTGCAAGGACGTTGACAACAGGACTCGAAAAGGTGGGGAACCTCAAGACGGTGGCACGTCGAAGATGCGAACTGGGGAAAGACAGGACGATAAATGTACTGAAAATGGTGTTTCGGATCGGGATTTTGAACACTATGTGAAGGTTATTAGATGGTTAGAGTGCGAAGGACATATCGAAAAAAATTTCAGACAGAAGTTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAAGTGTTTGTGGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCGGAATGCATATCGAGCAAAAAACCGACGACGACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2217 45.11 MMGSLVVAEYKVSFLGAIFDSPKCSKLSMQEKRELVYEISRSHGACEKLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSENKSSVPEVSKNIEPQSPASGHKTTKRQRKSDHLVPTSDFPSTSSHNDSGHTVSCKNLACRATLNPEDTFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGILKAGQSRGVDGSFYCVSCGKLNDLLGCCRKQLVHAKETRRVDILCYRVSLSQKLLHGTERYKVLYQIVDESVKKLEAEVGPIAGAPVKMGRGIVNRLLSGPDVQKLCASAIELLDSMLSSKSLHIVPNPDIQDASFVPTNMVRFEDVRSTSLTLVLSCEYGSSSENRVGFTLWHRKADDADYPTEPTYILQQPKARCVVMGLSPATEYHFKIVLFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYSDRTDNVGKNSTAHSKGTEMHSSAILSTDAFNLSDNGEEGTAAGTVPVLDEANAAGIVCLIPNSVGSKLENRHGSSAPKLNTNNQLGALVRSGMERQPFVGCSEDGLPITPCKLEVLKDSLGRGERLESNCKDVDNRTRKGGEPQDGGTSKMRTGERQDDKCTENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTTPPGFCMKLWH 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3770367 3773902 + CmoCh05G007250.1 Cmo05g00725 382860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00725 738 MobiDBLite consensus disorder prediction 461 502 - -
Cmo05g00725 738 ProSiteProfiles Fibronectin type-III domain profile. 347 447 IPR003961 GO:0005515
Cmo05g00725 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 738 IPR044514 GO:0010048|GO:0040029
Cmo05g00725 738 MobiDBLite consensus disorder prediction 610 646 - -
Cmo05g00725 738 CDD FN3 348 423 IPR003961 GO:0005515
Cmo05g00725 738 MobiDBLite consensus disorder prediction 94 110 - -
Cmo05g00725 738 SUPERFAMILY Fibronectin type III 352 424 IPR036116 GO:0005515
Cmo05g00725 738 MobiDBLite consensus disorder prediction 94 140 - -
Cmo05g00725 738 MobiDBLite consensus disorder prediction 123 140 - -
Cmo05g00725 738 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Cmo05g00725 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 738 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00725 Cmo-Chr5:3770367 Cmo12g00159 Cmo-Chr12:1030868 1.90E-16 dispersed
Cmo10g00421 Cmo-Chr10:1924845 Cmo05g00725 Cmo-Chr5:3770367 0 wgd
Cmo11g00383 Cmo-Chr11:1911728 Cmo05g00725 Cmo-Chr5:3770367 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00725 - - csv:101222501 1276.92