Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00727 ATGGAGTGGGACAGCAATTCGGATCTGAGCGGAGACGAGGAGGACGAGGGCTTCTTACTCAACGATGGTGGGCCTCTTCCTTTTCCTGTGGAGAACTTGTTCCAAACTGCGCCATGTGGGTTCGTCGTCACCGATTCTCTTGAACCCGACCATCCCATCATCTATGTCAACACCGTCTTCGAAATGGTTTCTGGCTATCGGGCGGAGGAAGTGCTTGGTCGCAATTGGTCAGATGAGGTCATGGAGATGTTAAAGGATTTCCCGGTGAATGATTACTTTCATCAAGCTGCCATCACTCTTGTTCCTATCAATTGCAAGGGCAACTATGACAATTACAATTCCAAAACGGCTGGAAGTCGGTTCTTGCAATGTAGAGGTCCATTTGCAAAAAGAAGGCACCCACTGGTTGACTCTTCAGTGGTTTCAGAAATCAGAAGATGTCTAGAGGATGGCACGGAATTTCAAGGCGAATTGTTGAACTTTAGGAAAGATGGTACCCCATTGATGAATAAATTGAGGTTAACACCTATCTATGGAGATGATGAAACAGTAACCCATGTTATTGGTATCCAGTTCTTCACTGAAGCCGATATTGATTTGGGACCTGTGACCAGTTCTACAACGAAGGAGTTAGCAAAATCGTCTGATAAGTTCCGTTCTGGCCTTTCATCTTTTCGCTTTACATCTGTTGGGGACCGAAATATTTGTCGTGGTGTATGTGGTATTCTCCAATTGAGTGATGAGGTGATATCGTTGAAAATACTCTCACGGTTGACGCCCAGAGATATAGCGTCAGTAGGATCTGTTTGTAGGCGGTTTTATGAGCTGACGAAGAACGAGGATCTCTGGAGAATGGTCTGCCAAAATGCCTGGGGTAGTGAAACAACACGTGTACTAGAGACTGTGCCTGGTGCAAAAACTCTTGGCTGGGGCCGGTTAGCCAGAGAATTGACAACTCTCGAAGATGCTGCCTGGAGGAAGCTAACCGTAGGGGGATCTGTCGAACCCTCACGTTGCAACTTCAGTGCTTGTGCAGTTGGTAATAGAGTTGTATTATTTGGTGGGGAGGGTGTTAATATGCAACCGATGAATGATACCTTTGTACTGGATTTAAATTCTAGTAAACCAGAGTGGCAGCATGTTCAAGTTAGTTCTCCACCTCCTGGTAGATGGGGTCATACTCTTTCTTGTGTAAATGGTTCTCATTTAGTCGTCTTTGGCGGTTGTGGTAGACAGGGCTTGCTTAATGATGTTTTCGTGTTGGATTTGGATGCGAATCCTCCAACCTGGCGTGAAATATCTGGATTGGCTCCTCCGCTTCCAAGATCATGGCATAGCTCCTGCACTCTTGACGGCACCAAGTTGATAGTCTCTGGTGGTTGTGCAGATTCTGGAGTACTTCTGAGTGATACTTTTCTGCTCGATCTCTCAATGGAGAAACCCATATGGAGGGAGATACCTGTAACTTGGACTCCCCCCTCTCGGTTGGGACACACATTATCTGTATATGGTGGCCGGAAGATTTTGATGTTTGGAGGTTTAGCGAAAAGTGGACCGTTACGGTTTCGATCAAGTGATGTCTTTACAATGGATTTAAGTGAGGAGGAGCCATGTTGGAGATGTGTAGCTGGAAGCGGAGTGCCGGGTGCTGGAAACCCAGGAGGGGTAGCACCTCCGCCTAGACTGGACCATGTCGCTGTGAGTCTCCCTGGTGGCAGAATACTGATATTTGGTGGCTCAGTGGCGGGTCTTCACTCTGCATCACAGCTTTACCTCCTTGATCCAACAGAAGAGAAACCAACATGGAGGATATTGAAAGTACCTGGACGGCCTCCAAGGTTCGCATGGGGACACAGCACGTGTGTCGTAGGGGGAACGAGGGCAATAGTCCTGGGAGGTCAAACTGGAGAGGAGTGGATGCTAAGTGAGCTTCATGAACTATCATTGGCCAGTTCTCTCATCTGA 1965 47.43 MEWDSNSDLSGDEEDEGFLLNDGGPLPFPVENLFQTAPCGFVVTDSLEPDHPIIYVNTVFEMVSGYRAEEVLGRNWSDEVMEMLKDFPVNDYFHQAAITLVPINCKGNYDNYNSKTAGSRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEDGTEFQGELLNFRKDGTPLMNKLRLTPIYGDDETVTHVIGIQFFTEADIDLGPVTSSTTKELAKSSDKFRSGLSSFRFTSVGDRNICRGVCGILQLSDEVISLKILSRLTPRDIASVGSVCRRFYELTKNEDLWRMVCQNAWGSETTRVLETVPGAKTLGWGRLARELTTLEDAAWRKLTVGGSVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSKPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDANPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVAGSGVPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYLLDPTEEKPTWRILKVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSLI 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3775187 3786182 - CmoCh05G007270.1 Cmo05g00727 382862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00727 654 PANTHER ADAGIO PROTEIN 1-LIKE 1 76 - -
Cmo05g00727 654 PANTHER ADAGIO PROTEIN 1-LIKE 114 653 - -
Cmo05g00727 654 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 76 - -
Cmo05g00727 654 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 114 653 - -
Cmo05g00727 654 Pfam Galactose oxidase, central domain 338 388 - -
Cmo05g00727 654 Gene3D - 553 652 IPR015915 GO:0005515
Cmo05g00727 654 Gene3D PAS domain 23 202 - -
Cmo05g00727 654 SUPERFAMILY Galactose oxidase, central domain 324 639 IPR011043 -
Cmo05g00727 654 TIGRFAM sensory_box: PAS domain S-box protein 32 82 IPR000014 -
Cmo05g00727 654 Pfam Kelch motif 495 545 IPR011498 GO:0005515
Cmo05g00727 654 Pfam Kelch motif 562 609 IPR011498 GO:0005515
Cmo05g00727 654 MobiDBLite consensus disorder prediction 1 19 - -
Cmo05g00727 654 Gene3D - 314 552 IPR015915 GO:0005515
Cmo05g00727 654 ProSiteProfiles PAS repeat profile. 30 84 IPR000014 -
Cmo05g00727 654 MobiDBLite consensus disorder prediction 1 21 - -
Cmo05g00727 654 Pfam F-box-like 250 288 IPR001810 GO:0005515
Cmo05g00727 654 Pfam Galactose oxidase, central domain 402 449 - -
Cmo05g00727 654 Gene3D - 237 286 - -
Cmo05g00727 654 SUPERFAMILY F-box domain 237 302 IPR036047 GO:0005515
Cmo05g00727 654 CDD PAS 37 78 IPR000014 -
Cmo05g00727 654 ProSiteProfiles F-box domain profile. 253 286 IPR001810 GO:0005515
Cmo05g00727 654 Pfam PAS domain 38 191 IPR000014 -
Cmo05g00727 654 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 190 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00727 K12115 ZTL; clock-associated PAS protein ZTL - csv:101222265 1177.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00076 Cmo-Chr4:413300 Cmo05g00727 Cmo-Chr5:3775187 1.33E-09 dispersed
Cmo05g00727 Cmo-Chr5:3775187 Cmo20g00160 Cmo-Chr20:801048 1.34E-06 dispersed
Cmo17g00611 Cmo-Chr17:6470551 Cmo05g00727 Cmo-Chr5:3775187 3.12E-08 transposed
Cmo12g00895 Cmo-Chr12:8203539 Cmo05g00727 Cmo-Chr5:3775187 0 wgd
Cmo12g01027 Cmo-Chr12:9603610 Cmo05g00727 Cmo-Chr5:3775187 1.37E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g332 . . . . . . . . Cmo05g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002995 2 1 2 3 2 2 4 1 2 1 2 1 2 0 1 2 2 2 2 2 1 1 1 1 2 2 1 2 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00727 Cmo_Chr05 FPKM 9.056775 11.504437 11.112591 12.66606 8.768334 10.15001 8.166929 17.230095 17.520618 16.59273