Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00742 ATGGTGGGTGAGGTGGCAATGGAGAAGAATAAGAAAGTAAGGAGAGAGAACAAATTTGAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTTCCTCTCATTGAAAACATCCTCAAACCCCTAGAAGGAATCAAACAAATCTCTGTTATTGTCCCGACAAGAACTCTCATTGCAAACGTACAATTAAAAGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGGTTGCTTCTAACAGCATCCTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTGGCCGTCGCTGCGGTCGCCGCCGGCATCTTTCCCATTCTCCTAAAAGCCATTTCCGCCGTTCGCCATCTGAGGATCGATGTCAACATTCTTGCCATTATTGCTGTGGTGGGGGCAATGAGTATGAATGACTACATGGAAGCTGGGAGCATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGCTGCAATGTGGTCGCTGATGAGCCTGGCCCCTCAAAAGGCCACCATAGCTGAAACTGGAGAGGTTGTGGAGGTAAAAGAGGTGACATTGAAGAGTGTGTTGGCAGTGAAGGGTGGTGAAGTTATTCCCATTGATGGCATTGTTGTGGATGGAAAATGTGATGTTGATGAGAAATCTTTGACGGGAGAGACTTTCCCAGTTCCCAAACTTAAAGATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATATTAGTGTTCAAACCACTGTTGTTGCTGAGGACTGCGTGGTGGCAAAGATGGCTGAGTTTGTAGAAGAAGCTCAAAACAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACTCCAGCTGTAGTTGTCATATCAGCTTGTGTAGCAGCCATTCCAGCTGCATTCAGAGTTCACAATCTCAGCCACTGGTTTCACTTAGCTCTGGTGGTCTTAGTGAGTGCATGTCCCTGTGCCCTTATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTCACGAAGGCCGCCATGGCCGGTGTTCTCATCAAAGGCAGCGACCACCTTGAAGTTCTTGCAAAGATTAAGGTTGTAGCCTTCGACAAGACAGGCACAATCACTAGAGGTGAATTTGTGATTTTCAAGCTCTACGAGATGATATCAGCTTCCACACCTTACTTCATTGGTAATTGCACAAAAAACTTCTCACCCAATTCTGTTTATGTTGAAATAAGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTCAACCATGCAAAGCTGCTTTCTACTGATATTAAACCTGAAAAAGTTGAGGAATTTGAGAACTTTCCAGGAGAAGGTGTTCGTGGGAAGATTGATGGGAAGGATATTTACATTGGAAAGGAGGAAATGAAACAAGGCCAAACCCTTGGATATGTATTTTGTGAGGAGATGGCTGTGGGATCCTTTGGTCTTTCGGATTCTTGTCGGTCAGGAGCTAAAGAAGGCATGGAGGAGCTCAAGAGTCTTGGCATTAAAACAGCTATGCTCACTGGGGACTGTAGTGCAGCTGCCATGCACGCCCAACAACAGCTGGAGAACGCGGTTGATGTAATCCATTCAGAGCTTCTTCCAAAGGAGAAAGCAAATGTGATAAAAGAATTCAAAAGGGATTATGGAGCAACCGCCATGGTTGGCGATGGCTTAAATGATACCCCAGCATTAGCCACAGCTGATATTGGCATATCAATGGGCATTTCAGGTTCACCTCTCGCTACTCAAACTGGGAATGTCATCTTAATGTCAAATGACATCACCAAAATCCCACAAGCCATCAAATTAGCAAGGAAATCTCATGCAAAAGTTGTTCAAAATGTCATTTTGTCAATCACTACCAAGATTGCAATCCTTGGCTTGGCCATCGCCGGACATCCGCTCGTTTGGGCGGCCGTTCTCGCCGATGTCGGTACCTGCCTATTGGTCATCTTGAACAGCATGCTTCTCTTGAGAGGAAGTGATCATAAACATGGGAACAAATGTTGCAAATCTTCCAAGCTATGCTCGACGAAACATGGACGATGCGATGGTAGTAACACTCGACCGTCTCATCATCATCATCACGATCATCATCACCATGATCATCGATGCCATGTCGTCGATGATAAATGGCCTAGTCGAGATAATCACAATGGAGATTGTGGGGATAAATTTCATCACAATCGTTCAAATCAATGTGAGAAAACCCCACTTGAGAAAGACAACAATGGGAATTGTTCAAAGAAAGTGGGTGAACCCAATTGTAATTGCCACTCACATCATGTAGCTATCGACATACATCAAGGTATTGACTGTGAGAGAATAGAGAAGCAATAA 2412 44.65 MVGEVAMEKNKKVRRENKFERSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIANVQLKGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAVRHLRIDVNILAIIAVVGAMSMNDYMEAGSIVFLFSIAEWLESRASHKANAAMWSLMSLAPQKATIAETGEVVEVKEVTLKSVLAVKGGEVIPIDGIVVDGKCDVDEKSLTGETFPVPKLKDSLVWAGTINLNGYISVQTTVVAEDCVVAKMAEFVEEAQNNKSKTQRFIDECAKYYTPAVVVISACVAAIPAAFRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLAKIKVVAFDKTGTITRGEFVIFKLYEMISASTPYFIGNCTKNFSPNSVYVEIRVSSIESKSSHPMAAALVNHAKLLSTDIKPEKVEEFENFPGEGVRGKIDGKDIYIGKEEMKQGQTLGYVFCEEMAVGSFGLSDSCRSGAKEGMEELKSLGIKTAMLTGDCSAAAMHAQQQLENAVDVIHSELLPKEKANVIKEFKRDYGATAMVGDGLNDTPALATADIGISMGISGSPLATQTGNVILMSNDITKIPQAIKLARKSHAKVVQNVILSITTKIAILGLAIAGHPLVWAAVLADVGTCLLVILNSMLLLRGSDHKHGNKCCKSSKLCSTKHGRCDGSNTRPSHHHHHDHHHHDHRCHVVDDKWPSRDNHNGDCGDKFHHNRSNQCEKTPLEKDNNGNCSKKVGEPNCNCHSHHVAIDIHQGIDCERIEKQ 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3902126 3907001 + CmoCh05G007420.1 Cmo05g00742 382877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00742 803 Gene3D - 347 635 IPR023214 -
Cmo05g00742 803 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Cmo05g00742 803 SUPERFAMILY Calcium ATPase, transduction domain A 193 278 IPR008250 -
Cmo05g00742 803 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 62 698 - -
Cmo05g00742 803 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 8 61 - -
Cmo05g00742 803 Pfam E1-E2 ATPase 181 357 - -
Cmo05g00742 803 Gene3D - 16 76 - -
Cmo05g00742 803 Gene3D - 167 282 - -
Cmo05g00742 803 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 62 698 - -
Cmo05g00742 803 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 8 61 - -
Cmo05g00742 803 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 153 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo05g00742 803 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 482 655 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo05g00742 803 Gene3D - 423 496 IPR023299 GO:0000166
Cmo05g00742 803 ProSiteProfiles Heavy-metal-associated domain profile. 21 59 IPR006121 GO:0046872
Cmo05g00742 803 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 130 681 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo05g00742 803 Pfam haloacid dehalogenase-like hydrolase 375 592 - -
Cmo05g00742 803 CDD P-type_ATPase_HM 80 680 - -
Cmo05g00742 803 PRINTS P-type cation-transporting ATPase superfamily signature 523 533 - -
Cmo05g00742 803 PRINTS P-type cation-transporting ATPase superfamily signature 228 242 - -
Cmo05g00742 803 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Cmo05g00742 803 PRINTS P-type cation-transporting ATPase superfamily signature 602 614 - -
Cmo05g00742 803 PRINTS P-type cation-transporting ATPase superfamily signature 578 597 - -
Cmo05g00742 803 MobiDBLite consensus disorder prediction 707 726 - -
Cmo05g00742 803 SUPERFAMILY Calcium ATPase, transmembrane domain M 131 419 IPR023298 -
Cmo05g00742 803 SUPERFAMILY HAD-like 377 679 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00742 Cmo-Chr5:3902126 Cmo03g01486 Cmo-Chr3:10644182 7.61E-69 dispersed
Cmo05g00742 Cmo-Chr5:3902126 Cmo05g00745 Cmo-Chr5:3933660 0 proximal
Cmo02g00477 Cmo-Chr2:2601591 Cmo05g00742 Cmo-Chr5:3902126 3.11E-62 transposed
Cmo10g00412 Cmo-Chr10:1870225 Cmo05g00742 Cmo-Chr5:3902126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00742 K01534 - csv:101203668 1137.09