Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00756 | ATGGAGAACATTCTCGACGAGTATCAGTACTACTGGGAAACGAACATGTTTCTGCAGACGGAAGAGTTCGACAGTTGGGGAGTGGACGAAGCGTTTTACGGTTCTTACGATTCAAGCTCGCCGGACGGAACGCCGTCGTCGTTAGAGGCGTCGAAGAACATCATGTCGGAGAGGAATCGGAGGAAGAAGCTGAACGACAGGCTTCTGGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGGAAGAGAAGAGAATCGAAGCGGAGATCTCAGATCTGGAATCAGGCAAAATCAAGAACAGAGCAACAAACGAAGACTATGACGGAATCTTGAGGGAGAAGAGAACGAATAAGAATCGGCAAGTACCGGAGCCGCCGCCGTCTTTCCCGATCGAAGTTCTCGACTTGAGGGTGAATTACATGGGAGAGAAGACGATGATGGTGAGCTTGACGTGCGAAAGAAGGAGCGACACCATAATGAAAATCTGCCAAGTTATTGAATCGCTTAAGATGAAGATTATTACGGCCACCATCACCATTGTTGCCAACAAGCTTTTGATCACGCTCTTCCTTGAGCTAAGGTTGCAGCCCCATGATTTAGATCAGGGGATATGGAGTGAAGAGTGA | 681 | 48.31 | MENILDEYQYYWETNMFLQTEEFDSWGVDEAFYGSYDSSSPDGTPSSLEASKNIMSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAEEKRIEAEISDLESGKIKNRATNEDYDGILREKRTNKNRQVPEPPPSFPIEVLDLRVNYMGEKTMMVSLTCERRSDTIMKICQVIESLKMKIITATITIVANKLLITLFLELRLQPHDLDQGIWSEE | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4037644 | 4039900 | + | CmoCh05G007560.1 | Cmo05g00756 | 382891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00756 | 226 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983 | |
Cmo05g00756 | 226 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 1 | 212 | - | - | |
Cmo05g00756 | 226 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 1 | 212 | - | - | |
Cmo05g00756 | 226 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 52 | 113 | IPR036638 | GO:0046983 | |
Cmo05g00756 | 226 | MobiDBLite | consensus disorder prediction | 37 | 56 | - | - | |
Cmo05g00756 | 226 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983 | |
Cmo05g00756 | 226 | MobiDBLite | consensus disorder prediction | 37 | 53 | - | - | |
Cmo05g00756 | 226 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983 | |
Cmo05g00756 | 226 | Coils | Coil | 87 | 114 | - | - | |
Cmo05g00756 | 226 | Pfam | Helix-loop-helix DNA-binding domain | 53 | 97 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00756 | Cmo11g00361 | CCT | |
Cmo05g00756 | Cmo10g00402 | CCT | |
Cmo05g00756 | Cmo12g00920 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00756 | Cmo-Chr5:4037644 | Cmo20g00557 | Cmo-Chr20:2692440 | 1.21E-22 | dispersed | |
Cmo10g00402 | Cmo-Chr10:1819981 | Cmo05g00756 | Cmo-Chr5:4037644 | 5.40E-75 | wgd | |
Cmo11g00361 | Cmo-Chr11:1780118 | Cmo05g00756 | Cmo-Chr5:4037644 | 3.50E-72 | wgd | |
Cmo12g00920 | Cmo-Chr12:8471988 | Cmo05g00756 | Cmo-Chr5:4037644 | 1.46E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9836 | PF00010 | HLH | 3.70E-11 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00756 | - | - | cmo:103492501 | 320.087 |