Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00756 ATGGAGAACATTCTCGACGAGTATCAGTACTACTGGGAAACGAACATGTTTCTGCAGACGGAAGAGTTCGACAGTTGGGGAGTGGACGAAGCGTTTTACGGTTCTTACGATTCAAGCTCGCCGGACGGAACGCCGTCGTCGTTAGAGGCGTCGAAGAACATCATGTCGGAGAGGAATCGGAGGAAGAAGCTGAACGACAGGCTTCTGGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGGAAGAGAAGAGAATCGAAGCGGAGATCTCAGATCTGGAATCAGGCAAAATCAAGAACAGAGCAACAAACGAAGACTATGACGGAATCTTGAGGGAGAAGAGAACGAATAAGAATCGGCAAGTACCGGAGCCGCCGCCGTCTTTCCCGATCGAAGTTCTCGACTTGAGGGTGAATTACATGGGAGAGAAGACGATGATGGTGAGCTTGACGTGCGAAAGAAGGAGCGACACCATAATGAAAATCTGCCAAGTTATTGAATCGCTTAAGATGAAGATTATTACGGCCACCATCACCATTGTTGCCAACAAGCTTTTGATCACGCTCTTCCTTGAGCTAAGGTTGCAGCCCCATGATTTAGATCAGGGGATATGGAGTGAAGAGTGA 681 48.31 MENILDEYQYYWETNMFLQTEEFDSWGVDEAFYGSYDSSSPDGTPSSLEASKNIMSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAEEKRIEAEISDLESGKIKNRATNEDYDGILREKRTNKNRQVPEPPPSFPIEVLDLRVNYMGEKTMMVSLTCERRSDTIMKICQVIESLKMKIITATITIVANKLLITLFLELRLQPHDLDQGIWSEE 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4037644 4039900 + CmoCh05G007560.1 Cmo05g00756 382891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00756 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cmo05g00756 226 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 212 - -
Cmo05g00756 226 PANTHER TRANSCRIPTION FACTOR BHLH35 1 212 - -
Cmo05g00756 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 113 IPR036638 GO:0046983
Cmo05g00756 226 MobiDBLite consensus disorder prediction 37 56 - -
Cmo05g00756 226 SMART finulus 54 103 IPR011598 GO:0046983
Cmo05g00756 226 MobiDBLite consensus disorder prediction 37 53 - -
Cmo05g00756 226 Gene3D - 46 114 IPR036638 GO:0046983
Cmo05g00756 226 Coils Coil 87 114 - -
Cmo05g00756 226 Pfam Helix-loop-helix DNA-binding domain 53 97 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00756 Cmo11g00361 CCT
Cmo05g00756 Cmo10g00402 CCT
Cmo05g00756 Cmo12g00920 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00756 Cmo-Chr5:4037644 Cmo20g00557 Cmo-Chr20:2692440 1.21E-22 dispersed
Cmo10g00402 Cmo-Chr10:1819981 Cmo05g00756 Cmo-Chr5:4037644 5.40E-75 wgd
Cmo11g00361 Cmo-Chr11:1780118 Cmo05g00756 Cmo-Chr5:4037644 3.50E-72 wgd
Cmo12g00920 Cmo-Chr12:8471988 Cmo05g00756 Cmo-Chr5:4037644 1.46E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9836 PF00010 HLH 3.70E-11 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00756 - - cmo:103492501 320.087