Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo05g00762 | ATGACCTCCTTCAAGCCCTCTCCCTATGCCAGACGGAGTGATGTGGAGTCCGGCAACTGCAATTCCGACGACCCCGAGGAGGACGACTCATTTAATCCTTTTGAGATTCATACCACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGATGTGTGTTTTTCTTTCCTGCTTTACTTCAGGTTAATCTTGGATTTGAGCAAGCTGCACTAGTGTTGAATGCTTCTCGTCGATTTCGGTATACCTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCTGGGAATCGTCTATCAGGTCCTGGGCCTACAGCATTTGCAGCTCCAAATGGTGATTTTTCTGTTGGGCAAGATCAACTGGCTGTGTTGGTAAAGGACCGAAATGTTGGCACTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTGCAATCAAACTTAGAGAAGGGGATAATTGGTGATGATTCTGATTTACTGAAACGGAGAAACACATATGGTTCAAACACATATCCTCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACGTTGATCATATTGATGATAGCTGCTGTTGCTTCGTTAGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTAACAGGCTTGACTTTAGAGTTCACAGACCAAGAACTTGATGCTTCTGTTAGTTCGGTTCAACTGTTCACTGACTCAAGGAATATGAGGGCAAGGTGGGTTGTTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGACATCGTTGTTGGTGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGACACTCACTTGCCATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCTTTTCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCAGCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAAGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCCCTTGCTGTTTTGATTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCCGTAGATGGAGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCCGAAGGGCTTCCACTAGCTGTTACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACGACTATTTGTAGTGATAAGACTGGAACCTTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGTTGGAGGGAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCCATGATACACTCCATACTTGTTGAAGGCATTGCTCTAAACTCAAATGGTAGTGTATATGTACCTGAGAGTGGTGGAGAGGTAGAGGTTACAGGTTCACCTACAGAAAAAGCTATTCTTAATTGGGGTATCAAGCTAGGAATGAACTTTCAAGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGTTCAGACAAAAAACGTGGTGGTGTTGCAGTTCAACGGGATAATCAAGTTCATATACACTGGAAAGGTGCTGCTGAGATAGTCTTGGCATCATGCACACGGTTTATTGATGAACATGATCACTCTGTCCAACTAGATGAAGATAAGATGAAGTATTTTAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGATGACCTTGCTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAAGGATGCAGTACGACTTTGTCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTGCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGTATTCCGTGCCTTATCTGATGCCCAAAGAGAAGAAGTCGCTGAGAAAATATCAGTGATGGGTCGATCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCGTTGAGAAAGAGGGGACACGTAGTTGCTGTAACTGGAGATGGTACAAATGATGCTCCTGCATTACACGAGGCAGATATTGGTCTTGCAATGGGCATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGCCTTTGATACATGGTCCGGTGGGGCCGATCATTGTCGGCTGGATGCAGGTTGTACGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTTACGGTTAATGTTGCAGCACTTATTATCAATGTGGTGGCAGCAATATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTTGGAGCATTAGCGTTGGCAACTGAACCACCAACCAATCACCTCATGGACAGGTCACCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAATCTGCTAATACAGGCATTTTATCAAGTCTCTGTGTTGCTTGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCCAATATAGAAGCTGTCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGTCAAATTTTCAACGAGTTTAATGCTCGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACTAAAAATTACCTCTTTATTGGGATCATTGCAATTACTGTTGTGCTCCAGGTGATAATAATCGAGTTTCTTGGAAAATTCACATCCACTGTCAGGCTAAATTGGAAATATTGGATTATTTCGATAATCATTGGTGTTATCAGTTGGCCTCTAGCTCTCCTTGGAAAATTTATACCTGTTCCTGAAACGCCCTTCCATGTGCTGATTATCAGAATGTTCCGTAAACGACGACCTGGGGGTGGTTAA | 3339 | 43.04 | MTSFKPSPYARRSDVESGNCNSDDPEEDDSFNPFEIHTTKHASVDRLRRWRCVFFFPALLQVNLGFEQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGNRLSGPGPTAFAAPNGDFSVGQDQLAVLVKDRNVGTLEQYGGVKGVADMLQSNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTGLTLEFTDQELDASVSSVQLFTDSRNMRARWVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGSMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVALAVLIVLLTRYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYVGGKKIDPPEKKSELSPMIHSILVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFQALRSESAILHVFPFSSDKKRGGVAVQRDNQVHIHWKGAAEIVLASCTRFIDEHDHSVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEDDLALLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKPLIHGPVGPIIVGWMQVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVSVLLVLNFRGRSLLHLNHSNIEAVKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRRPGGG | 1112 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4277755 | 4302689 | + | CmoCh05G007620.1 | Cmo05g00762 | 382897 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo05g00762 | 1112 | SUPERFAMILY | Calcium ATPase, transduction domain A | 284 | 378 | IPR008250 | - | |
| Cmo05g00762 | 1112 | Coils | Coil | 85 | 105 | - | - | |
| Cmo05g00762 | 1112 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 149 | 1091 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Cmo05g00762 | 1112 | Pfam | haloacid dehalogenase-like hydrolase | 502 | 826 | - | - | |
| Cmo05g00762 | 1112 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 507 | 513 | IPR018303 | - | |
| Cmo05g00762 | 1112 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cmo05g00762 | 1112 | SFLD | Haloacid Dehalogenase | 487 | 858 | - | - | |
| Cmo05g00762 | 1112 | Gene3D | - | 180 | 381 | - | - | |
| Cmo05g00762 | 1112 | Gene3D | - | 515 | 712 | IPR023299 | GO:0000166 | |
| Cmo05g00762 | 1112 | Pfam | E1-E2 ATPase | 285 | 483 | - | - | |
| Cmo05g00762 | 1112 | Gene3D | - | 206 | 1080 | - | - | |
| Cmo05g00762 | 1112 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 29 | 1101 | - | - | |
| Cmo05g00762 | 1112 | SFLD | p-type atpase | 487 | 858 | IPR044492 | - | |
| Cmo05g00762 | 1112 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 155 | 1091 | IPR023298 | - | |
| Cmo05g00762 | 1112 | SUPERFAMILY | HAD-like | 503 | 933 | IPR036412 | - | |
| Cmo05g00762 | 1112 | PRINTS | P-type cation-transporting ATPase superfamily signature | 329 | 343 | - | - | |
| Cmo05g00762 | 1112 | PRINTS | P-type cation-transporting ATPase superfamily signature | 727 | 737 | - | - | |
| Cmo05g00762 | 1112 | PRINTS | P-type cation-transporting ATPase superfamily signature | 505 | 519 | - | - | |
| Cmo05g00762 | 1112 | PRINTS | P-type cation-transporting ATPase superfamily signature | 836 | 848 | - | - | |
| Cmo05g00762 | 1112 | PRINTS | P-type cation-transporting ATPase superfamily signature | 812 | 831 | - | - | |
| Cmo05g00762 | 1112 | PRINTS | P-type cation-transporting ATPase superfamily signature | 705 | 716 | - | - | |
| Cmo05g00762 | 1112 | PANTHER | CATION TRANSPORTING ATPASE | 29 | 1101 | - | - | |
| Cmo05g00762 | 1112 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 779 | 862 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cmo05g00762 | 1112 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 445 | 528 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cmo05g00762 | 1112 | Gene3D | - | 502 | 857 | IPR023214 | - | |
| Cmo05g00762 | 1112 | CDD | P-type_ATPase_Ca_PMCA-like | 180 | 961 | - | - | |
| Cmo05g00762 | 1112 | Gene3D | - | 65 | 114 | - | - | |
| Cmo05g00762 | 1112 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 512 | 709 | IPR023299 | GO:0000166 | |
| Cmo05g00762 | 1112 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 68 | 90 | IPR024750 | GO:0005516 | |
| Cmo05g00762 | 1112 | Pfam | Cation transporter/ATPase, N-terminus | 155 | 223 | IPR004014 | - | |
| Cmo05g00762 | 1112 | SMART | Cation_ATPase_N_a_2 | 154 | 228 | IPR004014 | - | |
| Cmo05g00762 | 1112 | Pfam | Cation transporting ATPase, C-terminus | 913 | 1089 | IPR006068 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo05g00762 | Cmo12g00924 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo05g00762 | Cmo-Chr5:4277755 | Cmo08g00816 | Cmo-Chr8:5159023 | 0 | dispersed | |
| Cmo12g00924 | Cmo-Chr12:8557941 | Cmo05g00762 | Cmo-Chr5:4277755 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo05g00762 | K01537 | - | csv:101211703 | 1842.78 |