Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00762 ATGACCTCCTTCAAGCCCTCTCCCTATGCCAGACGGAGTGATGTGGAGTCCGGCAACTGCAATTCCGACGACCCCGAGGAGGACGACTCATTTAATCCTTTTGAGATTCATACCACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGATGTGTGTTTTTCTTTCCTGCTTTACTTCAGGTTAATCTTGGATTTGAGCAAGCTGCACTAGTGTTGAATGCTTCTCGTCGATTTCGGTATACCTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCTGGGAATCGTCTATCAGGTCCTGGGCCTACAGCATTTGCAGCTCCAAATGGTGATTTTTCTGTTGGGCAAGATCAACTGGCTGTGTTGGTAAAGGACCGAAATGTTGGCACTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTGCAATCAAACTTAGAGAAGGGGATAATTGGTGATGATTCTGATTTACTGAAACGGAGAAACACATATGGTTCAAACACATATCCTCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACGTTGATCATATTGATGATAGCTGCTGTTGCTTCGTTAGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTAACAGGCTTGACTTTAGAGTTCACAGACCAAGAACTTGATGCTTCTGTTAGTTCGGTTCAACTGTTCACTGACTCAAGGAATATGAGGGCAAGGTGGGTTGTTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGACATCGTTGTTGGTGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGACACTCACTTGCCATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCTTTTCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCAGCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAAGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCCCTTGCTGTTTTGATTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCCGTAGATGGAGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCCGAAGGGCTTCCACTAGCTGTTACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACGACTATTTGTAGTGATAAGACTGGAACCTTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGTTGGAGGGAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCCATGATACACTCCATACTTGTTGAAGGCATTGCTCTAAACTCAAATGGTAGTGTATATGTACCTGAGAGTGGTGGAGAGGTAGAGGTTACAGGTTCACCTACAGAAAAAGCTATTCTTAATTGGGGTATCAAGCTAGGAATGAACTTTCAAGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGTTCAGACAAAAAACGTGGTGGTGTTGCAGTTCAACGGGATAATCAAGTTCATATACACTGGAAAGGTGCTGCTGAGATAGTCTTGGCATCATGCACACGGTTTATTGATGAACATGATCACTCTGTCCAACTAGATGAAGATAAGATGAAGTATTTTAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGATGACCTTGCTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAAGGATGCAGTACGACTTTGTCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTGCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGTATTCCGTGCCTTATCTGATGCCCAAAGAGAAGAAGTCGCTGAGAAAATATCAGTGATGGGTCGATCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCGTTGAGAAAGAGGGGACACGTAGTTGCTGTAACTGGAGATGGTACAAATGATGCTCCTGCATTACACGAGGCAGATATTGGTCTTGCAATGGGCATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGCCTTTGATACATGGTCCGGTGGGGCCGATCATTGTCGGCTGGATGCAGGTTGTACGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTTACGGTTAATGTTGCAGCACTTATTATCAATGTGGTGGCAGCAATATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTTGGAGCATTAGCGTTGGCAACTGAACCACCAACCAATCACCTCATGGACAGGTCACCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAATCTGCTAATACAGGCATTTTATCAAGTCTCTGTGTTGCTTGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCCAATATAGAAGCTGTCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGTCAAATTTTCAACGAGTTTAATGCTCGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACTAAAAATTACCTCTTTATTGGGATCATTGCAATTACTGTTGTGCTCCAGGTGATAATAATCGAGTTTCTTGGAAAATTCACATCCACTGTCAGGCTAAATTGGAAATATTGGATTATTTCGATAATCATTGGTGTTATCAGTTGGCCTCTAGCTCTCCTTGGAAAATTTATACCTGTTCCTGAAACGCCCTTCCATGTGCTGATTATCAGAATGTTCCGTAAACGACGACCTGGGGGTGGTTAA 3339 43.04 MTSFKPSPYARRSDVESGNCNSDDPEEDDSFNPFEIHTTKHASVDRLRRWRCVFFFPALLQVNLGFEQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGNRLSGPGPTAFAAPNGDFSVGQDQLAVLVKDRNVGTLEQYGGVKGVADMLQSNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTGLTLEFTDQELDASVSSVQLFTDSRNMRARWVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGSMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVALAVLIVLLTRYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYVGGKKIDPPEKKSELSPMIHSILVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFQALRSESAILHVFPFSSDKKRGGVAVQRDNQVHIHWKGAAEIVLASCTRFIDEHDHSVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEDDLALLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKPLIHGPVGPIIVGWMQVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVSVLLVLNFRGRSLLHLNHSNIEAVKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRRPGGG 1112
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 4277755 4302689 + CmoCh05G007620.1 Cmo05g00762 382897
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00762 1112 SUPERFAMILY Calcium ATPase, transduction domain A 284 378 IPR008250 -
Cmo05g00762 1112 Coils Coil 85 105 - -
Cmo05g00762 1112 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 149 1091 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo05g00762 1112 Pfam haloacid dehalogenase-like hydrolase 502 826 - -
Cmo05g00762 1112 ProSitePatterns E1-E2 ATPases phosphorylation site. 507 513 IPR018303 -
Cmo05g00762 1112 MobiDBLite consensus disorder prediction 1 33 - -
Cmo05g00762 1112 SFLD Haloacid Dehalogenase 487 858 - -
Cmo05g00762 1112 Gene3D - 180 381 - -
Cmo05g00762 1112 Gene3D - 515 712 IPR023299 GO:0000166
Cmo05g00762 1112 Pfam E1-E2 ATPase 285 483 - -
Cmo05g00762 1112 Gene3D - 206 1080 - -
Cmo05g00762 1112 PANTHER CALCIUM-TRANSPORTING ATPASE 29 1101 - -
Cmo05g00762 1112 SFLD p-type atpase 487 858 IPR044492 -
Cmo05g00762 1112 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 1091 IPR023298 -
Cmo05g00762 1112 SUPERFAMILY HAD-like 503 933 IPR036412 -
Cmo05g00762 1112 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cmo05g00762 1112 PRINTS P-type cation-transporting ATPase superfamily signature 727 737 - -
Cmo05g00762 1112 PRINTS P-type cation-transporting ATPase superfamily signature 505 519 - -
Cmo05g00762 1112 PRINTS P-type cation-transporting ATPase superfamily signature 836 848 - -
Cmo05g00762 1112 PRINTS P-type cation-transporting ATPase superfamily signature 812 831 - -
Cmo05g00762 1112 PRINTS P-type cation-transporting ATPase superfamily signature 705 716 - -
Cmo05g00762 1112 PANTHER CATION TRANSPORTING ATPASE 29 1101 - -
Cmo05g00762 1112 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 779 862 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo05g00762 1112 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 445 528 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo05g00762 1112 Gene3D - 502 857 IPR023214 -
Cmo05g00762 1112 CDD P-type_ATPase_Ca_PMCA-like 180 961 - -
Cmo05g00762 1112 Gene3D - 65 114 - -
Cmo05g00762 1112 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 709 IPR023299 GO:0000166
Cmo05g00762 1112 Pfam Ca2+-ATPase N terminal autoinhibitory domain 68 90 IPR024750 GO:0005516
Cmo05g00762 1112 Pfam Cation transporter/ATPase, N-terminus 155 223 IPR004014 -
Cmo05g00762 1112 SMART Cation_ATPase_N_a_2 154 228 IPR004014 -
Cmo05g00762 1112 Pfam Cation transporting ATPase, C-terminus 913 1089 IPR006068 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo05g00762 Cmo12g00924 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00762 Cmo-Chr5:4277755 Cmo08g00816 Cmo-Chr8:5159023 0 dispersed
Cmo12g00924 Cmo-Chr12:8557941 Cmo05g00762 Cmo-Chr5:4277755 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00762 K01537 - csv:101211703 1842.78