Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00767 ATGAAGACGCCGGCGAATGGTGCCGCCGCCATGCCTAATTCTAGCGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGCGAACCTACCACCGGCCGGTTACCACGTAGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCCTTGAAGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCCGACCCGGAAACGGATGAAGTATATGCACAAATGACACTATTACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTGAAATCTAATAAGCCTCAGCCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCTATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTTCGTCACATATATCGAGGACAACCAAAACGGCATTTACTAACAACTGGTTGGAGCTTGTTTGTTAGTGGAAAGAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAGCAACAGCTTCTATTGGGCATCAGGCGAGCAAACAGGCAACCAACCAACTTATCATCATCAGTGTTGTCAACTGATAGTATGCATATTGGTATTCTTGCAGCAGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCAAGGGCAAGTCCTTCAGAATTTGTTGTTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCTAACCAAATATCACTCGGTATGCGCTTCAGAATGATGTTTGAGACAGAAGAGTCTGGAACTAGAAGGTATATGGGTACTATCACAGGTATAAGTGATCTTGATTCTGTCAGATGGAAGGGCTCACAGTGGCGTAATCTACAGGTCGGGTGGGACGAGTCAACTGGAGGAGAACGACGAAATCGAGTCTCGATATGGGAGATCGAGCCAGTTATTGCTCCATTTTTCATTTGTCCCCCTCCTTTTTTGAGATCGAAGCGTCCGAGGCAACCAGGAATGCCAGATGATGACTCCTCCGATTTAGATGGTATATGTAAAAGAACAATGTTTGGTGATGATTTTTGCATGAAAGATCCACAGGGATATCCCGGCCTGAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATGCAATGCAGCCAAGTTACATGCATTCGTTTTCGGGGTCTATGCTTCCGAACCTTGGCGGAGTCGATATTTCTCGACAAATTGGCTTGTCGAACACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTTCTTTCTCAAGCTCAGCAGTTGGATCAGCTACCTAAACTACCGTCAAGTATGAACTCATTGGGGTCTGTTGTGCAGCCATCTCAGCAGTTGGATGATATGTCTCAGCAGACCCGTTCGAATTTGATTAACCAAAACGCGGTCTCAAGTCAGATTCAAGCTCAAATAATGCAGCAGCAGCAGCCTCACACTAATGGGATCGTACTGCAGCAAAACCCGCAGCTTCAGAGAAGCCTCCCTCAGAATCAACCACAGACTATGAATCAGTCCCCGCTCCCGGAACCGATGATCCATCAGCTGCAGATGTCGGATAATCAGGTTCCGATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTGTTCTTCAGCCTGGTCAACTACCGGAACAGCTGAGACAGTCGGTGGATGCGTCCTTTTCCCGGTCCATGTCGTCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGTCCCTCCATCGAACGTGTCACCGCAGCAGGCAGCGAAGAGCAACGGTACGACGAATAACCGTTTCTCAAATCAGCATTTGCAGCCGAAACTTCCACAACTACAGCAACCAGCTCCATCTACTGTACTTTCTGATATGTCTAGACCAGTAGGACTTCCTCCTACTCAAACATACAATCAGCTCTCTGCAGCTACTAGCAGCGTAATAACCGGAGCAGCAGCGGCTGGCCAATCTGGAGTCACTGATGACATACCATCTTGCTCCACGTCACCGTCCACGAACAACGGTCCGAGTTTGATTCAGCCAGTAAACAATGGAAGGGTTCATCGAAGCACGGGATTGGTTGAGGATGTTGCTCAATCTTCTGCTACAATATTCAGTACAAATACCTTGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGGATTTTCGCACAACAAACGTTCTTGAGTGGCGTCGTTTCGCAGACCGATTTCTTGGACACGTCTTCCTCGACGACCTCGGCTTGCCTTTCACAGAATGAGGCTCAGTTGCAGCAGAATAACGTGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATAGTACTCAAGATTTGGAAGTACCAACCGATCTCCATAACGTTCCGTACGGGACGAATGTCGATGGACCATTGGTAGCGCAGTTAAACTCCGATCCTTTGTTAAACAAAGGCATTGGAGAGTTAGGGAAGGACTTCTCCAATAACTTTTCTTCTGGGGCTATGCTCACCACCTATGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAGTCGTTCGGTATTCCAGACATGACATTTAATTCTATGGATTCAGCGATGAACGATAACGCGTTCTTGAATCGAAACCAATGGGCTCCTCCGCCTCCATTCCAGCGTATGCGAACCTACACGAAGGTTTACAAACGTGGAGCTGTTGGGAGATCAATTGATATCACCAGTTACTCAGGTTACGACGAGCTTAAACAAGACCTTGCCCGTCGGTTCGGCATCGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTCGTTTACGTCGATCATGAAAACGACGTTTTACTCGTAGGCGACGACCCGTGGGAGGACTTCGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGCGATTTCGGGAACGGTGTCTTACTGAACCAAGCCTGCAGTAGCTCAGATGTTGGTTCATCAAAGCTCAGCAAGGCTATGATTTCCCAGCAATGGCGGAGATATAGCCAACCCCAACACTCAGCAATGGGCTTTAGCCATTGTCTGGTTAAATTTTCTTGGACTTCTAAGCTTAGACAACTTCAAAAACAGAGTTGA 3345 46.82 MKTPANGAAAMPNSSEGGLEKKIINPELWQACAGPLANLPPAGYHVVYFPQGHSEQVAASLKKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGICKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNAMQPSYMHSFSGSMLPNLGGVDISRQIGLSNTQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQPSQQLDDMSQQTRSNLINQNAVSSQIQAQIMQQQQPHTNGIVLQQNPQLQRSLPQNQPQTMNQSPLPEPMIHQLQMSDNQVPMQMLQKLQQQQQQQSLLAQQSVVLQPGQLPEQLRQSVDASFSRSMSSNQMLDIPQSTPAAVPPSNVSPQQAAKSNGTTNNRFSNQHLQPKLPQLQQPAPSTVLSDMSRPVGLPPTQTYNQLSAATSSVITGAAAAGQSGVTDDIPSCSTSPSTNNGPSLIQPVNNGRVHRSTGLVEDVAQSSATIFSTNTLTAVKPSLNISKNQSHGIFAQQTFLSGVVSQTDFLDTSSSTTSACLSQNEAQLQQNNVMSFNSQPMLFRDSTQDLEVPTDLHNVPYGTNVDGPLVAQLNSDPLLNKGIGELGKDFSNNFSSGAMLTTYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSAMNDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITSYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLLNQACSSSDVGSSKLSKAMISQQWRRYSQPQHSAMGFSHCLVKFSWTSKLRQLQKQS 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4338402 4345413 + CmoCh05G007670.1 Cmo05g00767 382902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00767 1114 ProSiteProfiles PB1 domain profile. 958 1043 IPR000270 GO:0005515
Cmo05g00767 1114 SUPERFAMILY CAD & PB1 domains 970 1037 - -
Cmo05g00767 1114 CDD B3_DNA 130 222 IPR003340 GO:0003677
Cmo05g00767 1114 Pfam AUX/IAA family 955 1043 IPR033389 -
Cmo05g00767 1114 MobiDBLite consensus disorder prediction 728 747 - -
Cmo05g00767 1114 Gene3D - 129 232 IPR015300 -
Cmo05g00767 1114 PANTHER AUXIN RESPONSE FACTOR 1 1065 - -
Cmo05g00767 1114 MobiDBLite consensus disorder prediction 620 695 - -
Cmo05g00767 1114 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Cmo05g00767 1114 SMART B3_2 131 233 IPR003340 GO:0003677
Cmo05g00767 1114 SUPERFAMILY DNA-binding pseudobarrel domain 120 260 IPR015300 -
Cmo05g00767 1114 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo05g00767 1114 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Cmo05g00767 1114 Gene3D - 954 1047 - -
Cmo05g00767 1114 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1065 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo05g00767 1114 MobiDBLite consensus disorder prediction 620 689 - -
Cmo05g00767 1114 Gene3D - 295 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02017 Cmo-Chr1:14190585 Cmo05g00767 Cmo-Chr5:4338402 6.23E-32 dispersed
Cmo05g00767 Cmo-Chr5:4338402 Cmo05g01425 Cmo-Chr5:10923211 0 dispersed
Cmo12g00930 Cmo-Chr12:8645593 Cmo05g00767 Cmo-Chr5:4338402 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9837 PF02309 AUX_IAA 1.50E-07 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00767 - - csv:101205542 1851.25