Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00777 ATGAGACTTGGCACATCGGAATCGCCACGCTTTGACCTCCTGATCCAGATTCTATTAGCCGTCTGTGGACCTAGCATCGGTGATGCTAAAGATATAAAGGGAATCAAAGGGTTCTCTTATAGTGGAAAAATGTTGGAGGGTGGTCAAAAATTCCCTGGGATGATCGATTTAAACGAGCATGCATATGATCTATCACAAGGGTTTTACCATAAACTTGGTGAGGGAACCAATATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTTGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGGTTGCGGCGGCGTGCAAATGATAACCATACTTTTCAACATAGTGTTAACCATCGTGGAAGAGTTAGACATCACCTGAGTGATGATGCACTAGCCCGAGCCTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTCTACAGAGGTACTTATGATGGCGAAGATGTCGCTATCAAGATCTTGGAGAGGCCAGAGAATGACGTAGAGAAGGCTCAGTTAATGGAACAGCAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCAATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGCTCTGTCCCATTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCACAGGGACTTGAAATCAGATAACCTTTTGATCTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCTCGGATTGAGGTGCAGACAGAGGGCATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACTTGTATAGCTTTGGTATCGTTCTGTGGGAGCTCATTACTGGAATGCTTCCATTCCAGAACATGACAGCCGTTCAGGCTGCTTTTGCAGTTGTTAACAAGGGAGTTCGTCCTATCATTCCCAATGATTGCTTACCTGTTTTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCTGATGTTAGGCCATCATTTTCCGAGGTCGTTCGAATGCTAGAGAATGCACAGACTGAGATCATGACGACTGTCCGTAAAGCTCGTTTCAGGTGTTGCATTATGCAGCCGATGACAACAGACTGA 1371 45.37 MRLGTSESPRFDLLIQILLAVCGPSIGDAKDIKGIKGFSYSGKMLEGGQKFPGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNHRGRVRHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDVEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFSEVVRMLENAQTEIMTTVRKARFRCCIMQPMTTD 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4440030 4450627 - CmoCh05G007770.1 Cmo05g00777 382912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00777 456 Pfam Protein tyrosine and serine/threonine kinase 176 429 IPR001245 GO:0004672|GO:0006468
Cmo05g00777 456 ProSiteProfiles Protein kinase domain profile. 175 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00777 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00777 Cmo-Chr5:4440030 Cmo07g00331 Cmo-Chr7:1551809 8.38E-99 dispersed
Cmo14g01770 Cmo-Chr14:13686586 Cmo05g00777 Cmo-Chr5:4440030 5.58E-66 dispersed
Cmo18g00354 Cmo-Chr18:2315755 Cmo05g00777 Cmo-Chr5:4440030 8.01E-84 dispersed
Cmo03g01058 Cmo-Chr3:7879430 Cmo05g00777 Cmo-Chr5:4440030 2.25E-20 transposed
Cmo12g00939 Cmo-Chr12:8727422 Cmo05g00777 Cmo-Chr5:4440030 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74356 PF07714 PK_Tyr_Ser-Thr 2.10E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00777 - - csv:101213713 825.854