Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00781 ATGGCATCCACCTCCTCCAATTCGCCCTGTGCTGCTTGCAAATTCCTCCGCCGTAAATGCCAACCGGAATGTGTTTTCGCGCCCTATTTCCCGCCGGATCAGCCTCAGAAATTCGCGAATGTTCATAAGGTATTCGGCGCTAGTAATGTCACTAAACTTCTCAACGAATTGCATCCTCACCAGCGGGAAGACGCTGTTAATTCTCTCGCTTATGAAGCCGATATGCGTCTCCGTGATCCTGTTTATGGCTGTGTTGGAGTAATTTCTCTGCTTCAACATCAACTCTGTAAACTCCAAATGGATCTCACTTCCGCTAAATCCGAACTCTCTAAGTATAAAACCCTAGGCATTGGGAACCCCGCCGCTCTGATTTCTTCGCCTTCTCCTCTTACTGCACAGCGGAACCACCAGCCGACGTTTAATTTTGGTAGAGATCAACCTCATAGTCTCTGTTACGATCAATTTTTCCCTCGCGATCAACAACAACAACAACAACAACAACAACAACAGATGATGCTCCGACGAAGCTTCGACGGTGGTACTAACTACGATGGACTTTTGGCCGTCAATGTCACCGTCGGTAACCTTACCCACCCGTTCCAGCAATCTCGCGCCGCTGCTGGAGACGATCGTCGCGGAACTCTCGACCATTCTTAG 657 49.01 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTSAKSELSKYKTLGIGNPAALISSPSPLTAQRNHQPTFNFGRDQPHSLCYDQFFPRDQQQQQQQQQQQMMLRRSFDGGTNYDGLLAVNVTVGNLTHPFQQSRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4480338 4480994 + CmoCh05G007810.1 Cmo05g00781 382916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00781 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cmo05g00781 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 2 185 - -
Cmo05g00781 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cmo05g00781 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02817 Cmo-Chr4:20199087 Cmo05g00781 Cmo-Chr5:4480338 1.55E-58 dispersed
Cmo05g00781 Cmo-Chr5:4480338 Cmo20g01156 Cmo-Chr20:11332397 2.40E-59 dispersed
Cmo15g00156 Cmo-Chr15:724698 Cmo05g00781 Cmo-Chr5:4480338 8.62E-47 dispersed
Cmo05g00781 Cmo-Chr5:4480338 Cmo02g00614 Cmo-Chr2:3809187 3.85E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9839 PF03195 LOB 1.90E-43 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00781 - - csv:101203281 379.407