Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00802 ATGGATGTGGTGGTACTGGATACTGTTTTTCTTACATACGACATAGTTGCTCTGTTTTCAGGTAAGCTTGATATGGGGACAAAGCTTATAAGAGCTTGCGTTGAAGAAGATAGCGATGATTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACGATCATGAAAAACAAGACGGTTGTGTCCCTGCTAGTGTGTCGGCAACCGTCTCTGAATCACAGCCAGTTAAAGTGGAAAGTGAGGTAGAAGTTGCCAATGTTGCAAAAGTAACGAGATCCCTTCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGCTTGATACGAAGCATCTAGATCAGAACTTTTCTGTAAGACCTTCTCTTTCGAAGGGAGTCATTCGTGGATGTCCACATTGTAATAATTGCCAAAAGGTTATTGCGAGATGGCGTCCAGAAGAATCGTGCCGACCAAATCTCGAGGATGCACCTGTGTTTTACCCAACTGAAGAGGTGTTTATCAGTGCTTCTGGATTCGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCAAAAGCAGAGCCATATGGGATTTGTCGTATTGTCCCGCCTTCGTCTTGGAAGCCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACGCGTGTCCAAAGGATTGATAAGCTTCAAAACCGAGATTCACTAAGAAAGAACTCTCGGTTTTGCAGTCAGATGAGGAGGAAAAGGAGGAGGGGTAATCGAAAGGGGGTCGATGTTACCATCTTAAATGGAATAAATGGAGATGCTGGGCCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTTCTTTAGCTTTGTTTCAAAAATATGCAGAAGACTTTAAGTCTCAGTATTTTAGTAAACCACTCGATGATACTTCAAAGGGTTGTAACCCGTCGATGCTGCCAGAGAACGAACATTGGAAACCGTCTTTGGAAAATATCGAGGGCGAATATTGGCGGATGGTAGAGAAACCAACGGAAGAGATTGAGAGTTGCAGTCAAGAGGGCTCAACATCAGATGAAGAGAAGTACGTAAAATCTGGCTGGAACCTCAACAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTATGAGAACAGTAATATATCTGGAGTCCTGGTACCATGGCTGTACATCGGGATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGCGATCCCAAAGTCTGGTATGGTGTTCCAGGAAACGGTGCCAGTAAACTAGAAGACGCTATGAAAAAGCATTTACCTGACCTCTTTCAAGAACAGCCCGATTTACTCCATAAACTGGCAAGTTCCTTCGCTAATATGATAATGTCGTCGGTTTATATGGAATTTTCCCCCCAAGCAGAAAGCAGTGCAATAGTGTGTTTTAAAAATGGCAATAATATTTGCAAAAATCTGATTTTTCGTAATTATGTTTGGCCAAAATGTTCGTCTAAACTGCTATCCGTTACACAACTTTCTCCGTCTATATTGAAAATCGAGGGTGTGCCCGTATATAGGTGTATTCAGAATCCCGGAGAGTTCGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGCGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTCGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCACGATAAGCTATTGCTTGGCGCCGCACGAGAAGCTGTGAGGGCACATTGGGAACTAAATTTTCTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTATGCGGAAAAGATGGCGTCTTAGCAAGAGCGTTCAAGACTCGAGTCGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCAACGGCAATTAAGATGGAGAGCAACTTTGACGCCTCTAACGAGAGAGAGTGCATTTCATGCCTCTTTGACTTGCATCTGTCGGCCGTCGGGTGTCATTGTTCACCGGATAAATATGTATGCTTGAATCACGCAAAGCAGTTGTGTTCTTGTGCTTGGGAGAAGAGAATTTTTCTCTTCCGCTACGACATCAGCGAATTGAACGTTCTTCTTGAAGCATTGGAGGGTAAGTTAAGTGCAGTATACCGGTGGGCGAGGCAGAATCTCGGTCTGGCACTCAGTACGTCAAGGGAGTTGAGTTCTCAATCATCGACCATGTCCCTTGGGAAACCTCAATGGAAAGAAATCTTGAGGCAATCTTCATTATTGCCCGCTCTAACGGCTATTGACAGCGCTTCTCATCATGCCAAAACGTTATCTACCGTTAACGGTTCGGGAAAGGTAGTTGAGCAGCAAAATTATAAATCTGAGGTGAAAAATGAAAACCATGACCTTGTGGCAACGAATTCGAGGCATACCGATTCGCAGTCCTGTAAGGAGGATACAAATGCTCTGAATTTGGATAAAATGTGTACTGAAAATGTGATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGACGTAGCTGAAAGTTTATCAGTGAAGCCGCTCGAAACCTCAAATCGTTTCTCTGATATTGATTCTAAGGCTAGCCTGTGCAACTACAATGATAATACGAGTCTGCACAGCCCGGTGACTGATGCAACGACCATCGAAGAAAAGGAAGTCAACTTGTTGATTGAAAGAAAATCGAATAATTGCCAATCGAGCGTTGTTCCTTTAAATAGAAACACAGCTAATGCTATTCAGAACAACAATTTTTCAGAAGCTGGGTTAGGTCGTAGTAATAAAGTATTTTCAGCTTCAACGGACATCGATTCTCGAAAATCACAGACTTGTGGCTCGGGAAAACCGAATGAGGGTAGGCACGGAAACGTGGGAACAAGTGCTACCTCTTTTGTGTTGGACCCTAGTAGAACCACTGCAAGTTTGTCCTGCAATCAAGCTAATATGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGCTAGTTCGGAGAATTAACTGCAATGTAGAGCCCTTAGAATATGGAACCGTGCTCTCAGGAAAGTCTTGGTCGAACAGTCGAGCCATTTTTCCGAAAGGATTTAAGAGCAGGGTCAAGTATATAAGCGTTTTAGATCCATCAACTTTGTGTTACTATGTTTCTGAAATTCTCGACGCCGGACGGGATGGACCTCTTTTCATGGGCTCTTTTCTGCTTTTCGTCGTGGTCGTTTTTCTTAGTCAAGAGTTTTCTTCATCTCGGCTCACAGAGAGTGGCCTTTCGTGTCGTGTTTTGGTCATTATTTTGTGCCTGTTTCCAAGTTCAAATGATTTAGGCTATGTCGAGTTCCACCCTCTCGTGTCGGTTGTGTATTGCTTCTGTCTGGTTGTTTTGGAGCATTGTCCATCCGAGGTATTCGTTCACGTTTCTGCTGCTAGATGTTGGGAGCTGATTCGAGATCGAGTTAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAATGAATCTTCCTCCTTTACAGCCTCCTGGGAGCTTAGATGGCTTAGAAATGTTCGGATTCACTTCACCGGCAATCGTGCAGGTAAACCCATTACTTAAAAACTTTCGATACCGCATGGACGACCGACCGACATTGTCGAAAACTCGCAATGAGCTTGTTCCGAAAGGAGAACTTGCCATTGAGGCAATGGATCGAAATCGAGTATGTTGCGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCACGTACATAGTCCACAACTGTCTCAATCGACAGAAATGAAAACGACCGAAAGGAACCATAGGGGGGTCGATCCTAGGCAAGCTGGAGTCGATATAATAGTACTTAGGGGATTGTTGAAGAAGGCAAACATTGATGAACTAAACTTACTCTATACCGTTTTAAATGATAGTAGTAGGGCAACGGTCGATCAAGGCGCGTTGACTCGGCTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 4092 43.62 MDVVVLDTVFLTYDIVALFSGKLDMGTKLIRACVEEDSDDFPSVPPGFESYISFSLGKVHDHEKQDGCVPASVSATVSESQPVKVESEVEVANVAKVTRSLRRKPCVNYRQYDYCSDDELDTKHLDQNFSVRPSLSKGVIRGCPHCNNCQKVIARWRPEESCRPNLEDAPVFYPTEEVFISASGFEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSLRKNSRFCSQMRRKRRRGNRKGVDVTILNGINGDAGPYEAERFGFDPGPDFSLALFQKYAEDFKSQYFSKPLDDTSKGCNPSMLPENEHWKPSLENIEGEYWRMVEKPTEEIESCSQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYENSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGASKLEDAMKKHLPDLFQEQPDLLHKLASSFANMIMSSVYMEFSPQAESSAIVCFKNGNNICKNLIFRNYVWPKCSSKLLSVTQLSPSILKIEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNFLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECARRNLPCSSSTAIKMESNFDASNERECISCLFDLHLSAVGCHCSPDKYVCLNHAKQLCSCAWEKRIFLFRYDISELNVLLEALEGKLSAVYRWARQNLGLALSTSRELSSQSSTMSLGKPQWKEILRQSSLLPALTAIDSASHHAKTLSTVNGSGKVVEQQNYKSEVKNENHDLVATNSRHTDSQSCKEDTNALNLDKMCTENVILLSDDEGDEHKKTISNDVAESLSVKPLETSNRFSDIDSKASLCNYNDNTSLHSPVTDATTIEEKEVNLLIERKSNNCQSSVVPLNRNTANAIQNNNFSEAGLGRSNKVFSASTDIDSRKSQTCGSGKPNEGRHGNVGTSATSFVLDPSRTTASLSCNQANMDRFLRQKGPRMAKLVRRINCNVEPLEYGTVLSGKSWSNSRAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGRDGPLFMGSFLLFVVVVFLSQEFSSSRLTESGLSCRVLVIILCLFPSSNDLGYVEFHPLVSVVYCFCLVVLEHCPSEVFVHVSAARCWELIRDRVNQEIAKQHKLGRMNLPPLQPPGSLDGLEMFGFTSPAIVQVNPLLKNFRYRMDDRPTLSKTRNELVPKGELAIEAMDRNRVCCEYWDSRPYSRPHVHSPQLSQSTEMKTTERNHRGVDPRQAGVDIIVLRGLLKKANIDELNLLYTVLNDSSRATVDQGALTRLLNEEIQSHRR 1363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4687565 4695163 - CmoCh05G008020.1 Cmo05g00802 382937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00802 1363 Gene3D Cupin 154 577 - -
Cmo05g00802 1363 MobiDBLite consensus disorder prediction 978 999 - -
Cmo05g00802 1363 Pfam JmjC domain, hydroxylase 526 576 IPR003347 -
Cmo05g00802 1363 Pfam JmjC domain, hydroxylase 406 475 IPR003347 -
Cmo05g00802 1363 SUPERFAMILY Clavaminate synthase-like 374 473 - -
Cmo05g00802 1363 Gene3D - 1043 1238 - -
Cmo05g00802 1363 ProSiteProfiles FYR domain FYRC motif profile. 1157 1247 IPR003889 GO:0005634
Cmo05g00802 1363 SMART cupin_9 373 593 IPR003347 -
Cmo05g00802 1363 MobiDBLite consensus disorder prediction 1283 1305 - -
Cmo05g00802 1363 Pfam F/Y-rich N-terminus 1050 1091 IPR003888 GO:0005634
Cmo05g00802 1363 SMART JmjN_1 168 217 IPR003349 -
Cmo05g00802 1363 Pfam C5HC2 zinc finger 683 733 IPR004198 -
Cmo05g00802 1363 Pfam F/Y rich C-terminus 1164 1230 IPR003889 GO:0005634
Cmo05g00802 1363 SMART fyrc_3 1160 1286 IPR003889 GO:0005634
Cmo05g00802 1363 PANTHER JUMONJI 14-RELATED 527 787 - -
Cmo05g00802 1363 PANTHER LYSINE-SPECIFIC DEMETHYLASE 527 787 - -
Cmo05g00802 1363 PANTHER LYSINE-SPECIFIC DEMETHYLASE 105 483 - -
Cmo05g00802 1363 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1163 1253 - -
Cmo05g00802 1363 ProSiteProfiles FYR domain FYRN motif profile. 1036 1094 IPR003888 GO:0005634
Cmo05g00802 1363 PANTHER JUMONJI 14-RELATED 1261 1360 - -
Cmo05g00802 1363 PANTHER JUMONJI 14-RELATED 850 1105 - -
Cmo05g00802 1363 PANTHER JUMONJI 14-RELATED 1163 1253 - -
Cmo05g00802 1363 ProSiteProfiles JmjC domain profile. 373 593 IPR003347 -
Cmo05g00802 1363 ProSiteProfiles JmjN domain profile. 177 218 IPR003349 -
Cmo05g00802 1363 Pfam jmjN domain 170 211 IPR003349 -
Cmo05g00802 1363 PANTHER JUMONJI 14-RELATED 105 483 - -
Cmo05g00802 1363 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1261 1360 - -
Cmo05g00802 1363 PANTHER LYSINE-SPECIFIC DEMETHYLASE 850 1105 - -
Cmo05g00802 1363 SUPERFAMILY Clavaminate synthase-like 516 621 - -
Cmo05g00802 1363 SMART fyrn_3 1050 1094 IPR003888 GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00802 Cmo12g00962 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00802 Cmo-Chr5:4687565 Cmo13g00490 Cmo-Chr13:5874937 1.43E-12 dispersed
Cmo12g00962 Cmo-Chr12:8969479 Cmo05g00802 Cmo-Chr5:4687565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9840 PF05965 FYRC 1.20E-11 No_clan Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00802 - - mcha:111018179 1789.62