Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00837 ATGGCTTCAATCAACTGGTTGGGTTTCTCCCTCTCCCCCCAACATCACCAACTCCCCCACCACCCCTCCGACCACCCTCACGCCGTCTCCGCCGCTGCCTTCACCACCGACCAAATCTCCGCCTCTGACGTCCCCGCCGTCTGCTTTGACAACCTTCCTTCCTCCTATGGCGTCTATGACTCTCAAGATTGGAATAGTGTGAAGGGTTTAGGGCAGACTCAAAGTTCGGATTTTTCTGGTTTAATCGACACCCATCACCAACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACCCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATCTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGCCAAACGGCGGAAGCGGTGATGGCGGTGGAAGACCCAACCCCAGTAACGGTAACTACACTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAACCAACCGGCGCCGCCGCAAGCGGTGGCTAAAAGCGGCGGAGATCACGACGGAGCAGTAGCAAAACCTAATATCACAAACCCACATACTTTATCACTGTCGATGAACACCGGACCACCACCACCACCGTCGCAGTCCTCCGACTCGGAAGCTCTACCACTTCTCGTAACAAACGGCGGCGAAAGCTCCTCCTCCGATAAGAAACAACCCAAATCATCCGCCACCGAGGTAGACACGGAAAACAGCGCCATTGAAGCTGTCCCAAGAAAATCCATGGACACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACCAGAAAAGGAAGACAGGTCTATTTGGGAGGTTATGACAAAGAACAAAAGGCTGCTAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACTACCACCACCAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCATATGACCCGACAAGAGTTTGTAGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGAAACAAAGACCTTTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCCGAGGCATACGACATAGCAGCCATAAAGTTCCGAGGACTAAATGCCGTGACCAACTTCGACATGACTCGTTACGATGTCAAAGCCATTCTTGAAAGCAACACATTGCCTGTTGGTGGTGCTGCCAAGCGTTTAAAGGATATTGACCATTCTAACATTCCTCTGCATCTCCAATCAACTGAAGAAAACATATCATCACATTTATCTAATGGAATAATTACTACCGGGGGCGGTGGATGGCCAACTCTCGCCTTCCACCACCACCACCACCCCTACGCCTCTCACTACCCTTATGGTGCACTACAGCAACGGCTGTGGTGCAAGCAAGAGAACGATGTCACTGCCGGGAACTTCTTGGACTCGATGGACCAGAGCTCCGGGTCGAGCTCGGTGGTTTATAGTAGAGATGGGTACGGTGGGAACTTCATGATTCCGATGGGAGCGGAAGGGGGTGGATTGGGAGACATTGGAGAAGTGAATATGTTTGGTGGTGGTTGTAACGTGGATGACCCATTCCATGCAACAAGAACGAGCAATTTGTATGATTATAATAATTCCTCCCATCAGCTGCAACAACCGCCGCCGGAGCTGCAAGCCTCCTCCGGCAACAACTGGCTTCCGCCAGCCAGGTCGGTTTGTCACGGCGGAACTCCGCCGCCTTTCACCATTTGGAATGACACTTAA 1887 50.61 MASINWLGFSLSPQHHQLPHHPSDHPHAVSAAAFTTDQISASDVPAVCFDNLPSSYGVYDSQDWNSVKGLGQTQSSDFSGLIDTHHQPKLENFLGHHSFTDHDHPAAVYTNASANYIFQNCSLELPSEPNGGSGDGGGRPNPSNGNYTSSIGLSMIKTWLRNQPAPPQAVAKSGGDHDGAVAKPNITNPHTLSLSMNTGPPPPPSQSSDSEALPLLVTNGGESSSSDKKQPKSSATEVDTENSAIEAVPRKSMDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEQKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPVGGAAKRLKDIDHSNIPLHLQSTEENISSHLSNGIITTGGGGWPTLAFHHHHHPYASHYPYGALQQRLWCKQENDVTAGNFLDSMDQSSGSSSVVYSRDGYGGNFMIPMGAEGGGLGDIGEVNMFGGGCNVDDPFHATRTSNLYDYNNSSHQLQQPPPELQASSGNNWLPPARSVCHGGTPPPFTIWNDT 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5236754 5239859 - CmoCh05G008370.1 Cmo05g00837 382972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00837 628 ProSiteProfiles AP2/ERF domain profile. 262 328 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 MobiDBLite consensus disorder prediction 127 150 - -
Cmo05g00837 628 CDD AP2 261 330 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 Pfam AP2 domain 262 320 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 Pfam AP2 domain 364 414 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 CDD AP2 363 422 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700|GO:0006355
Cmo05g00837 628 Gene3D AP2/ERF domain 262 330 IPR036955 GO:0003700|GO:0006355
Cmo05g00837 628 MobiDBLite consensus disorder prediction 580 603 - -
Cmo05g00837 628 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 PRINTS Ethylene responsive element binding protein signature 404 424 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 MobiDBLite consensus disorder prediction 209 241 - -
Cmo05g00837 628 SUPERFAMILY DNA-binding domain 261 330 IPR016177 GO:0003677
Cmo05g00837 628 SMART rav1_2 364 428 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 SMART rav1_2 262 334 IPR001471 GO:0003700|GO:0006355
Cmo05g00837 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 517 - -
Cmo05g00837 628 SUPERFAMILY DNA-binding domain 363 423 IPR016177 GO:0003677
Cmo05g00837 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 517 - -
Cmo05g00837 628 MobiDBLite consensus disorder prediction 164 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01275 Cmo-Chr2:7603976 Cmo05g00837 Cmo-Chr5:5236754 1.00E-118 dispersed
Cmo03g00934 Cmo-Chr3:7088777 Cmo05g00837 Cmo-Chr5:5236754 9.18E-116 dispersed
Cmo05g00125 Cmo-Chr5:542544 Cmo05g00837 Cmo-Chr5:5236754 5.12E-89 dispersed
Cmo05g00837 Cmo-Chr5:5236754 Cmo20g00077 Cmo-Chr20:403519 1.41E-128 dispersed
Cmo04g00922 Cmo-Chr4:4635302 Cmo05g00837 Cmo-Chr5:5236754 5.19E-92 transposed
Cmo12g01004 Cmo-Chr12:9385816 Cmo05g00837 Cmo-Chr5:5236754 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9843 PF00847 AP2 3.80E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00837 K09285 - csv:101219473 946.806