Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00837 | ATGGCTTCAATCAACTGGTTGGGTTTCTCCCTCTCCCCCCAACATCACCAACTCCCCCACCACCCCTCCGACCACCCTCACGCCGTCTCCGCCGCTGCCTTCACCACCGACCAAATCTCCGCCTCTGACGTCCCCGCCGTCTGCTTTGACAACCTTCCTTCCTCCTATGGCGTCTATGACTCTCAAGATTGGAATAGTGTGAAGGGTTTAGGGCAGACTCAAAGTTCGGATTTTTCTGGTTTAATCGACACCCATCACCAACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACCCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATCTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGCCAAACGGCGGAAGCGGTGATGGCGGTGGAAGACCCAACCCCAGTAACGGTAACTACACTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAACCAACCGGCGCCGCCGCAAGCGGTGGCTAAAAGCGGCGGAGATCACGACGGAGCAGTAGCAAAACCTAATATCACAAACCCACATACTTTATCACTGTCGATGAACACCGGACCACCACCACCACCGTCGCAGTCCTCCGACTCGGAAGCTCTACCACTTCTCGTAACAAACGGCGGCGAAAGCTCCTCCTCCGATAAGAAACAACCCAAATCATCCGCCACCGAGGTAGACACGGAAAACAGCGCCATTGAAGCTGTCCCAAGAAAATCCATGGACACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACCAGAAAAGGAAGACAGGTCTATTTGGGAGGTTATGACAAAGAACAAAAGGCTGCTAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACTACCACCACCAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCATATGACCCGACAAGAGTTTGTAGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGAAACAAAGACCTTTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCCGAGGCATACGACATAGCAGCCATAAAGTTCCGAGGACTAAATGCCGTGACCAACTTCGACATGACTCGTTACGATGTCAAAGCCATTCTTGAAAGCAACACATTGCCTGTTGGTGGTGCTGCCAAGCGTTTAAAGGATATTGACCATTCTAACATTCCTCTGCATCTCCAATCAACTGAAGAAAACATATCATCACATTTATCTAATGGAATAATTACTACCGGGGGCGGTGGATGGCCAACTCTCGCCTTCCACCACCACCACCACCCCTACGCCTCTCACTACCCTTATGGTGCACTACAGCAACGGCTGTGGTGCAAGCAAGAGAACGATGTCACTGCCGGGAACTTCTTGGACTCGATGGACCAGAGCTCCGGGTCGAGCTCGGTGGTTTATAGTAGAGATGGGTACGGTGGGAACTTCATGATTCCGATGGGAGCGGAAGGGGGTGGATTGGGAGACATTGGAGAAGTGAATATGTTTGGTGGTGGTTGTAACGTGGATGACCCATTCCATGCAACAAGAACGAGCAATTTGTATGATTATAATAATTCCTCCCATCAGCTGCAACAACCGCCGCCGGAGCTGCAAGCCTCCTCCGGCAACAACTGGCTTCCGCCAGCCAGGTCGGTTTGTCACGGCGGAACTCCGCCGCCTTTCACCATTTGGAATGACACTTAA | 1887 | 50.61 | MASINWLGFSLSPQHHQLPHHPSDHPHAVSAAAFTTDQISASDVPAVCFDNLPSSYGVYDSQDWNSVKGLGQTQSSDFSGLIDTHHQPKLENFLGHHSFTDHDHPAAVYTNASANYIFQNCSLELPSEPNGGSGDGGGRPNPSNGNYTSSIGLSMIKTWLRNQPAPPQAVAKSGGDHDGAVAKPNITNPHTLSLSMNTGPPPPPSQSSDSEALPLLVTNGGESSSSDKKQPKSSATEVDTENSAIEAVPRKSMDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEQKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPVGGAAKRLKDIDHSNIPLHLQSTEENISSHLSNGIITTGGGGWPTLAFHHHHHPYASHYPYGALQQRLWCKQENDVTAGNFLDSMDQSSGSSSVVYSRDGYGGNFMIPMGAEGGGLGDIGEVNMFGGGCNVDDPFHATRTSNLYDYNNSSHQLQQPPPELQASSGNNWLPPARSVCHGGTPPPFTIWNDT | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5236754 | 5239859 | - | CmoCh05G008370.1 | Cmo05g00837 | 382972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00837 | 628 | ProSiteProfiles | AP2/ERF domain profile. | 262 | 328 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | ProSiteProfiles | AP2/ERF domain profile. | 364 | 422 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | MobiDBLite | consensus disorder prediction | 127 | 150 | - | - | |
Cmo05g00837 | 628 | CDD | AP2 | 261 | 330 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | Pfam | AP2 domain | 262 | 320 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | Pfam | AP2 domain | 364 | 414 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | CDD | AP2 | 363 | 422 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | Gene3D | AP2/ERF domain | 364 | 424 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | Gene3D | AP2/ERF domain | 262 | 330 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | MobiDBLite | consensus disorder prediction | 580 | 603 | - | - | |
Cmo05g00837 | 628 | PRINTS | Ethylene responsive element binding protein signature | 263 | 274 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | PRINTS | Ethylene responsive element binding protein signature | 404 | 424 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | MobiDBLite | consensus disorder prediction | 209 | 241 | - | - | |
Cmo05g00837 | 628 | SUPERFAMILY | DNA-binding domain | 261 | 330 | IPR016177 | GO:0003677 | |
Cmo05g00837 | 628 | SMART | rav1_2 | 364 | 428 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | SMART | rav1_2 | 262 | 334 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00837 | 628 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 5 | 517 | - | - | |
Cmo05g00837 | 628 | SUPERFAMILY | DNA-binding domain | 363 | 423 | IPR016177 | GO:0003677 | |
Cmo05g00837 | 628 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 5 | 517 | - | - | |
Cmo05g00837 | 628 | MobiDBLite | consensus disorder prediction | 164 | 251 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01275 | Cmo-Chr2:7603976 | Cmo05g00837 | Cmo-Chr5:5236754 | 1.00E-118 | dispersed | |
Cmo03g00934 | Cmo-Chr3:7088777 | Cmo05g00837 | Cmo-Chr5:5236754 | 9.18E-116 | dispersed | |
Cmo05g00125 | Cmo-Chr5:542544 | Cmo05g00837 | Cmo-Chr5:5236754 | 5.12E-89 | dispersed | |
Cmo05g00837 | Cmo-Chr5:5236754 | Cmo20g00077 | Cmo-Chr20:403519 | 1.41E-128 | dispersed | |
Cmo04g00922 | Cmo-Chr4:4635302 | Cmo05g00837 | Cmo-Chr5:5236754 | 5.19E-92 | transposed | |
Cmo12g01004 | Cmo-Chr12:9385816 | Cmo05g00837 | Cmo-Chr5:5236754 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9843 | PF00847 | AP2 | 3.80E-12 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00837 | K09285 | - | csv:101219473 | 946.806 |