Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00859 ATGGGGTCCTGCTTGTCTGCGGAAAGCAGGAGCCCCATTCCTGGTTCCCCAAACACTCCGGCTAAGCACCGTCGGAGCAAGAACAGTTCTAAGAGGCGAAATGTTTCTCGAAATTCCTCCTTTGGGGATTCGTCACTTCATCGGATCCCCGGCAGGCTGTTCGGCAATGGTGCCACTGATGTGGCTTCTCTGTTCACGCAGCAGGGAAAGAAAGGGACCAATCAAGATGCCATGATTGTCTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCGAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTCAACTTGACCACAGATGATGTTCATAGAGAGATCAGCCTTAATGCATCAAGTGTAAACTCAGACGAAACAACCTCCTTTTTGTCTGCTAATGAGGAGTTCAAGGCCTCCACCGATCTTGATGGAACGGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAGCTCAGAATGCACCAAACCATAGATTGCATCTGTAGTGGCACTACAGCAGTGACTTTCGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCCGTTTTGGGTATGAGAGATAAAGATGACTCTCTTGTTGCTATTCAATTGACTGTGGATCTTAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAAAGGTCGTATCTTTGCTCTCCAAGACGAACCTGATGTTGCTCGAGTCTGGCTTCCAGACAGCAACTCTCCTGGACTTGCCATGGCGCGGGCGTTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCTGAAATATCATATCGACGACTCACGGAAAAAGACGAATTCATTGTTCTGGCTTCAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTCGTAGATATTGTTGCATCAGCTCGAAAACGTACTACTGCAGCTCGAACTCTGGTGGAGACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCTAAGATGGATGACTGTGCGGTCATTTGCCTCTTCCTTGACTCAAACTCCAGCAATCCATCATCTGCTTCCAATAACAAACTGGATGAGCAACAAAGCTTAGTAGATCAAGTCAGTACAGCAGTTGTGGTTGAAAATCTCTGTGGCCCAAATGGTCTGAATCGTTCAGGAACCATCAAAACGAGCAAGAACATTTTGCAGGATGGAAGCGAAGAAGAAGAAGATGAATGGAAGGAGGAAGAACAGTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGGGTCTCGCGCGTAAACACTCTGGTAAACCTGCCGAGATTCGATCCTGGAAAAGAAGGTAAGGCCAGCCGGAAGTGA 1458 46.5 MGSCLSAESRSPIPGSPNTPAKHRRSKNSSKRRNVSRNSSFGDSSLHRIPGRLFGNGATDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREISLNASSVNSDETTSFLSANEEFKASTDLDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDCICSGTTAVTFVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRKCKGRIFALQDEPDVARVWLPDSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLASDGIWDVLSNKEVVDIVASARKRTTAARTLVETAIKAWKHKYPTSKMDDCAVICLFLDSNSSNPSSASNNKLDEQQSLVDQVSTAVVVENLCGPNGLNRSGTIKTSKNILQDGSEEEEDEWKEEEQSEMGIEWSALEGVSRVNTLVNLPRFDPGKEGKASRK 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5570993 5574848 + CmoCh05G008590.1 Cmo05g00859 382994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00859 485 ProSiteProfiles PPM-type phosphatase domain profile. 61 380 IPR001932 -
Cmo05g00859 485 Gene3D - 58 382 IPR036457 -
Cmo05g00859 485 SMART PP2C_4 51 378 IPR001932 -
Cmo05g00859 485 MobiDBLite consensus disorder prediction 1 16 - -
Cmo05g00859 485 MobiDBLite consensus disorder prediction 1 48 - -
Cmo05g00859 485 MobiDBLite consensus disorder prediction 426 450 - -
Cmo05g00859 485 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 469 - -
Cmo05g00859 485 Pfam Protein phosphatase 2C 134 359 IPR001932 -
Cmo05g00859 485 PANTHER ALPHABET, ISOFORM E-RELATED 1 469 - -
Cmo05g00859 485 CDD PP2Cc 61 380 IPR001932 -
Cmo05g00859 485 SUPERFAMILY PP2C-like 61 381 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00117 Cmo-Chr2:615738 Cmo05g00859 Cmo-Chr5:5570993 1.08E-146 dispersed
Cmo03g00330 Cmo-Chr3:4439194 Cmo05g00859 Cmo-Chr5:5570993 2.31E-108 dispersed
Cmo05g00859 Cmo-Chr5:5570993 Cmo08g00081 Cmo-Chr8:420886 5.53E-167 dispersed
Cmo07g01285 Cmo-Chr7:7102504 Cmo05g00859 Cmo-Chr5:5570993 9.42E-111 dispersed
Cmo01g01764 Cmo-Chr1:13087240 Cmo05g00859 Cmo-Chr5:5570993 3.88E-90 transposed
Cmo11g00953 Cmo-Chr11:5012030 Cmo05g00859 Cmo-Chr5:5570993 6.28E-174 transposed
Cmo16g01053 Cmo-Chr16:7378460 Cmo05g00859 Cmo-Chr5:5570993 8.50E-165 transposed
Cmo01g00519 Cmo-Chr1:2498314 Cmo05g00859 Cmo-Chr5:5570993 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00859 - - csv:101222150 809.29