Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00868 ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTGAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGCTATGGGTATCACTGGGCTAAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAAAAGCCACAAGTCTGAAACCATTCCCCAACTCAAGCTGGAAGACTTGAAGCAGGTGCAGATAAAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACATGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGCTGCAGGAGCAAGTAGAAGTACAAAGGCATTTGCAGCTGAGAATTGAAGCGCAAGGGAAGTACTTAAAGAGGGTGTTGAGGAAGGCAGAAGAGACATTTGCAGGGTACGGATGTTGTTCAGAAGCACTGGAAGAGCTCTCTCAATTGGCTTCAATGGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGACTAACAATGCAAGAAAGTAACGAGAATAATCAAGAGGAATTCAGAATGATCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGAATTGGAAGTGGAAGTGGAAGTGGAATTGGATCAGAGTTGATTGAGTTTCTTTGA 756 44.18 MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKFRLGKSHKSETIPQLKLEDLKQVQIKGGKLDVENSDVGQNHNMKERKKIWDVMEMQMEVEKRLQEQVEVQRHLQLRIEAQGKYLKRVLRKAEETFAGYGCCSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQESNENNQEEFRMIDLNDAATGSGSGIGSGSGSGIGSELIEFL 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5707748 5709145 + CmoCh05G008680.1 Cmo05g00868 383003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00868 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 4 206 - -
Cmo05g00868 251 Pfam MYB-CC type transfactor, LHEQLE motif 118 160 IPR025756 -
Cmo05g00868 251 Gene3D - 15 73 - -
Cmo05g00868 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 206 IPR044848 GO:0003700
Cmo05g00868 251 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Cmo05g00868 251 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00513 Cmo-Chr1:2468014 Cmo05g00868 Cmo-Chr5:5707748 4.93E-72 dispersed
Cmo05g00868 Cmo-Chr5:5707748 Cmo06g01724 Cmo-Chr6:11843093 1.16E-51 dispersed
Cmo05g00868 Cmo-Chr5:5707748 Cmo20g00312 Cmo-Chr20:1530207 5.48E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9844 PF14379 Myb_CC_LHEQLE 1.50E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00868 - - cmos:111450554 452.595