Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00870 ATGGTCTCCCATCCTTCAAGTTCCTACAAACAAATCATAATAGTTGCGGCAATTGCAGCCGGCCTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTCACACCTTACGTACAACAACTGGGAGTTCCACGCACATGGTCATCTTTCATATGGCTTTGCGGCCCAATGTCAGGCCTCATTGTGCAGCCCACTGTGGGATACTACAGCGATCGTTGCACCTCTAGGTTTGGGCGTCGTCGGCCCTTCATTGTTGCTGGGGCTGTCTTTGTGGCGGTTGCAGTTTTCCTCATAGGCTTCGCTGCAGACATTGGGCATTCCGCGGGGGACGAGCTTGCCAAACGCACAAAGCCAAGGGCTGTGGCCATATTCGTGGTTGGATTCTGGGTTCTTGATGTGGCTAACAACATGCTCCAAGGCCCTTGTAGGGCCCTGTTGGCAGACATGTCTTGTAACAACCACAAAAAGATGAGAGTGGCCAATGGGCTGTTCTCCTTCTTCTTGGGCGTAGGGAATGTGTTGGGGTACGCAGCTGGGGCCAATAGCCAACTCCATACACTCCTTCCATTCACAATCACCGAAGCATGCGATGTTTATTGCGCCAACCTCAAAACCTGCTTCTTGATAGACATCGTGTTTCTCCTCACGGTTACCACGTTCGCGATGTTGATGGTGGGTGAGAAGCCGTGGGAGCCCATACACATGGACGGAGAATCAACGCCCTTCTTTGTGCAGTTGATTGGTGCGCTGAAGCAGTTGTCGAGGCCCATGTGGATCCTGATGCTGGTGACAGCCTTGAATTGGGTGGGTTGGTTCCCATTTATAATGTACGACACCGACTGGATGGGTGCGGAAGTGTACGGAGGAAAGCCGAAAGGGAGTCCGGAAGAATCCAAGTTGTATGAGATGGGTGTTCGAGCAGGGGCGCTGGGGCTGATGATAAACTCCTTCGTGCTCGGGTTTTCCTCTTTGGGGATAGAGCCATTGAGCCGTATTGTAGGAGGGCTCAGGTGGGTGTGGGGAATTGTGAACATTATATTTACGGTTTGTATGGGAGGCATGGTGGTGGTTACAACGGTGGCAGAGCGTTGGAGGTCGGTTCATGGGTTGGCGCATCCGCCGCCCAACGTCAGGGCTGGAGCCTTTTCAATCTTTGCAGTGTTGGGCATTCCACTTTCGGTCACTTTCAGCGTTCCCTTTGCGCTGGCATCTATCTTTTCTTCAAATTCCAACGCGGGGCAAGGGCTGTCCTTGGGAATCCTGAACCTGTTCATAGTGATCCCACAGCTTTTAGTGTCGGCAGTTAGTGGGCCCTTAGACGCAGCCTTCGGGGGAGGGAACTTACCGGCGTTCGTGATGGGTGGAATTGCGGCCTTTGCAAGCGCCATGTGTGCCATCTTCCTGCTCCCCGACCCACCACCTCAGTCTGATGTGTCCTTAACAATGGGCGGTGGCCATTGA 1458 53.29 MVSHPSSSYKQIIIVAAIAAGLQFGWALQLSLLTPYVQQLGVPRTWSSFIWLCGPMSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAVFVAVAVFLIGFAADIGHSAGDELAKRTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRVANGLFSFFLGVGNVLGYAAGANSQLHTLLPFTITEACDVYCANLKTCFLIDIVFLLTVTTFAMLMVGEKPWEPIHMDGESTPFFVQLIGALKQLSRPMWILMLVTALNWVGWFPFIMYDTDWMGAEVYGGKPKGSPEESKLYEMGVRAGALGLMINSFVLGFSSLGIEPLSRIVGGLRWVWGIVNIIFTVCMGGMVVVTTVAERWRSVHGLAHPPPNVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSNSNAGQGLSLGILNLFIVIPQLLVSAVSGPLDAAFGGGNLPAFVMGGIAAFASAMCAIFLLPDPPPQSDVSLTMGGGH 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5771453 5773077 - CmoCh05G008700.1 Cmo05g00870 383005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00870 485 SUPERFAMILY MFS general substrate transporter 10 474 IPR036259 -
Cmo05g00870 485 TIGRFAM GPH_sucrose: sucrose/H+ symporter 9 472 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cmo05g00870 485 Gene3D MFS general substrate transporter like domains 6 467 IPR036259 -
Cmo05g00870 485 PANTHER SUGAR TRANSPORTER 9 478 - -
Cmo05g00870 485 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 9 478 - -
Cmo05g00870 485 CDD MFS_SLC45_SUC 21 466 - -
Cmo05g00870 485 Pfam MFS/sugar transport protein 24 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00870 Cmo-Chr5:5771453 Cmo12g00183 Cmo-Chr12:1194417 8.10E-159 dispersed
Cmo01g00506 Cmo-Chr1:2439390 Cmo05g00870 Cmo-Chr5:5771453 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00870 K15378 - csv:116401998 818.15