Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00870 ATGGTCTCCCATCCTTCAAGTTCCTACAAACAAATCATAATAGTTGCGGCAATTGCAGCCGGCCTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTCACACCTTACGTACAACAACTGGGAGTTCCACGCACATGGTCATCTTTCATATGGCTTTGCGGCCCAATGTCAGGCCTCATTGTGCAGCCCACTGTGGGATACTACAGCGATCGTTGCACCTCTAGGTTTGGGCGTCGTCGGCCCTTCATTGTTGCTGGGGCTGTCTTTGTGGCGGTTGCAGTTTTCCTCATAGGCTTCGCTGCAGACATTGGGCATTCCGCGGGGGACGAGCTTGCCAAACGCACAAAGCCAAGGGCTGTGGCCATATTCGTGGTTGGATTCTGGGTTCTTGATGTGGCTAACAACATGCTCCAAGGCCCTTGTAGGGCCCTGTTGGCAGACATGTCTTGTAACAACCACAAAAAGATGAGAGTGGCCAATGGGCTGTTCTCCTTCTTCTTGGGCGTAGGGAATGTGTTGGGGTACGCAGCTGGGGCCAATAGCCAACTCCATACACTCCTTCCATTCACAATCACCGAAGCATGCGATGTTTATTGCGCCAACCTCAAAACCTGCTTCTTGATAGACATCGTGTTTCTCCTCACGGTTACCACGTTCGCGATGTTGATGGTGGGTGAGAAGCCGTGGGAGCCCATACACATGGACGGAGAATCAACGCCCTTCTTTGTGCAGTTGATTGGTGCGCTGAAGCAGTTGTCGAGGCCCATGTGGATCCTGATGCTGGTGACAGCCTTGAATTGGGTGGGTTGGTTCCCATTTATAATGTACGACACCGACTGGATGGGTGCGGAAGTGTACGGAGGAAAGCCGAAAGGGAGTCCGGAAGAATCCAAGTTGTATGAGATGGGTGTTCGAGCAGGGGCGCTGGGGCTGATGATAAACTCCTTCGTGCTCGGGTTTTCCTCTTTGGGGATAGAGCCATTGAGCCGTATTGTAGGAGGGCTCAGGTGGGTGTGGGGAATTGTGAACATTATATTTACGGTTTGTATGGGAGGCATGGTGGTGGTTACAACGGTGGCAGAGCGTTGGAGGTCGGTTCATGGGTTGGCGCATCCGCCGCCCAACGTCAGGGCTGGAGCCTTTTCAATCTTTGCAGTGTTGGGCATTCCACTTTCGGTCACTTTCAGCGTTCCCTTTGCGCTGGCATCTATCTTTTCTTCAAATTCCAACGCGGGGCAAGGGCTGTCCTTGGGAATCCTGAACCTGTTCATAGTGATCCCACAGCTTTTAGTGTCGGCAGTTAGTGGGCCCTTAGACGCAGCCTTCGGGGGAGGGAACTTACCGGCGTTCGTGATGGGTGGAATTGCGGCCTTTGCAAGCGCCATGTGTGCCATCTTCCTGCTCCCCGACCCACCACCTCAGTCTGATGTGTCCTTAACAATGGGCGGTGGCCATTGA 1458 53.29 MVSHPSSSYKQIIIVAAIAAGLQFGWALQLSLLTPYVQQLGVPRTWSSFIWLCGPMSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAVFVAVAVFLIGFAADIGHSAGDELAKRTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRVANGLFSFFLGVGNVLGYAAGANSQLHTLLPFTITEACDVYCANLKTCFLIDIVFLLTVTTFAMLMVGEKPWEPIHMDGESTPFFVQLIGALKQLSRPMWILMLVTALNWVGWFPFIMYDTDWMGAEVYGGKPKGSPEESKLYEMGVRAGALGLMINSFVLGFSSLGIEPLSRIVGGLRWVWGIVNIIFTVCMGGMVVVTTVAERWRSVHGLAHPPPNVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSNSNAGQGLSLGILNLFIVIPQLLVSAVSGPLDAAFGGGNLPAFVMGGIAAFASAMCAIFLLPDPPPQSDVSLTMGGGH 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5771453 5773077 - CmoCh05G008700.1 Cmo05g00870 383005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00870 485 SUPERFAMILY MFS general substrate transporter 10 474 IPR036259 -
Cmo05g00870 485 TIGRFAM GPH_sucrose: sucrose/H+ symporter 9 472 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cmo05g00870 485 Gene3D MFS general substrate transporter like domains 6 467 IPR036259 -
Cmo05g00870 485 PANTHER SUGAR TRANSPORTER 9 478 - -
Cmo05g00870 485 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 9 478 - -
Cmo05g00870 485 CDD MFS_SLC45_SUC 21 466 - -
Cmo05g00870 485 Pfam MFS/sugar transport protein 24 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00870 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 818.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00870 Cmo-Chr5:5771453 Cmo12g00183 Cmo-Chr12:1194417 8.10E-159 dispersed
Cmo01g00506 Cmo-Chr1:2439390 Cmo05g00870 Cmo-Chr5:5771453 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g00506 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.9 6.0e-181 631.3
Cmo05g00870 . 10 485 Sucrose Transporter Gene Family AT1G22710 61.9 1.0e-175 614.0
Cmo12g00183 . 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 5.7e-139 491.9
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.8 6.0e-178 621.3
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT2G14670 62.4 1.9e-171 599.7
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 9.7e-136 481.1
Cmo01g00506 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.8 9.3e-149 524.2
Cmo05g00870 . 7 399 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-142 503.8
Cmo12g00675 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.0 1.0e-182 637.1
Cmo05g00901 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.4 8.2e-177 617.5
Cmo01g00506 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 9.3e-163 570.9
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G06170 59.6 1.9e-160 563.1
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.4 1.1e-174 610.5
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G43610 62.2 3.0e-169 592.4
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.3e-132 470.7
Cmo12g00183 . 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 4.1e-206 714.9
Cmo05g00870 . 1 479 Sucrose Transporter Gene Family AT1G09960 50.9 4.7e-133 472.2
Cmo01g00506 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 3.1e-129 459.5
Cmo01g00506 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-173 605.1
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71880 59.7 2.4e-169 592.8
Cmo12g00183 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 2.3e-135 479.9
Cmo01g00506 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 2.2e-167 586.3
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71890 58.7 3.6e-165 578.9
Cmo01g00506 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-173 605.1
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71880 59.7 2.4e-169 592.8
Cmo12g00183 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 2.3e-135 479.9
Cmo01g00506 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.9 6.0e-181 631.3
Cmo05g00870 . 10 485 Sucrose Transporter Gene Family AT1G22710 61.9 1.0e-175 614.0
Cmo12g00183 . 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 5.7e-139 491.9
Cmo12g00675 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.0 1.0e-182 637.1
Cmo05g00901 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.4 8.2e-177 617.5
Cmo12g00183 . 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 4.1e-206 714.9
Cmo05g00870 . 1 479 Sucrose Transporter Gene Family AT1G09960 50.9 4.7e-133 472.2
Cmo01g00506 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 3.1e-129 459.5
Cmo01g00506 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 2.2e-167 586.3
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71890 58.7 3.6e-165 578.9
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.4 1.1e-174 610.5
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G43610 62.2 3.0e-169 592.4
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.3e-132 470.7
Cmo01g00506 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.8 9.3e-149 524.2
Cmo05g00870 . 7 399 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-142 503.8
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.8 6.0e-178 621.3
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT2G14670 62.4 1.9e-171 599.7
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 9.7e-136 481.1
Cmo01g00506 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 9.3e-163 570.9
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G06170 59.6 1.9e-160 563.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00870 Cmo_Chr05 FPKM 6.592705 5.926343 6.266614 6.583871 9.390136 8.9028 9.615813 7.792353 9.558973 10.261736