Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00921 ATGTCGATCTCTTCTTCCGATGACTGCTTTATTGACTCTCATTTACTCTGTGACGAGGACTCCTCCGATATTTTGTCCGGAGAGTCGCCAGAGTACTCCTCGGACCTTGAATCGCCTGCCAGTAGTGAGGATTCTATTGCTAGTTTCATAGAGGATGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTTCACTCTCAATCGCTCGATTCCTCCGCAAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAATTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTATCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCACTTGTTCCTTCGTTCCTGGATCTCCAGATCGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTTACAACATTGGATTGGCGGCTCCGATCCGTAACCCCCTTCAGCTTCATCGGATTCTTCGCCTACAAAGTCGATCCCACCGGAACATTTTCCAGTTTTCTTATCTCACGCTCCACAGAAATCATTCTCTCCAATATTCGAGGTGACGCAAGCTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATACCCAATTTGACCCTTCTCAATCCTGAACATGCAGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGACTAATGCAGCCGTTAACATCGGAGAGTGGTCGTAGAAAGCCCCCGAAAGTGATACCGCAACTCCGAGTGAGAATCCGAGCTGGGTTGAGGTACAGCAACTCGTCGTCGTCGTTGTCATCAACAAGGTTAGGTTATAAAAGGAGGAAGTTGAATAATTGCTTGTGGGTAGAAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGAGGAATAA 1014 46.15 MSISSSDDCFIDSHLLCDEDSSDILSGESPEYSSDLESPASSEDSIASFIEDERHFVPGIDYLSRFHSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPLVPSFLDLQIEGAKYIFEPRTIRRMELLVLTTLDWRLRSVTPFSFIGFFAYKVDPTGTFSSFLISRSTEIILSNIRGDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKDKIVGCYRLMQPLTSESGRRKPPKVIPQLRVRIRAGLRYSNSSSSLSSTRLGYKRRKLNNCLWVEEDDKENSKFRAEE 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7189219 7191423 - CmoCh05G009210.1 Cmo05g00921 383056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00921 337 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Cmo05g00921 337 CDD CYCLIN 76 168 IPR013763 -
Cmo05g00921 337 MobiDBLite consensus disorder prediction 21 40 - -
Cmo05g00921 337 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Cmo05g00921 337 SMART Cyclin_C_2 178 307 IPR004367 -
Cmo05g00921 337 SUPERFAMILY Cyclin-like 160 274 IPR036915 -
Cmo05g00921 337 Gene3D - 59 176 - -
Cmo05g00921 337 SMART cyclin_7 81 169 IPR013763 -
Cmo05g00921 337 PANTHER CYCLINS 24 318 IPR039361 -
Cmo05g00921 337 Pfam Cyclin, C-terminal domain 178 280 IPR004367 -
Cmo05g00921 337 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Cmo05g00921 337 PANTHER CYCLIN-D1-1 24 318 - -
Cmo05g00921 337 MobiDBLite consensus disorder prediction 26 40 - -
Cmo05g00921 337 Gene3D - 48 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00312 Cmo-Chr4:1547610 Cmo05g00921 Cmo-Chr5:7189219 1.84E-156 dispersed
Cmo04g01665 Cmo-Chr4:8468889 Cmo05g00921 Cmo-Chr5:7189219 1.82E-143 dispersed
Cmo05g00557 Cmo-Chr5:2692406 Cmo05g00921 Cmo-Chr5:7189219 9.56E-51 dispersed
Cmo05g00921 Cmo-Chr5:7189219 Cmo16g00330 Cmo-Chr16:1507017 4.33E-57 dispersed
Cmo12g00652 Cmo-Chr12:4203093 Cmo05g00921 Cmo-Chr5:7189219 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00921 K18810 - csv:101210686 600.897