Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00952 ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGCCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCGGGCTTTCAGACAGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGCCTAGTTGCCCTTGGCCCACGCGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATGCTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAATCTCAGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCCCACCTTATGGGTTGGCATGCAATTGCAAACAGCACGACGAGAACTGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAG 819 47.74 MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQHQAAFESGFQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDEGKVRKMLKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSTTRTEDNRRANDANPRYGGDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7664738 7668082 - CmoCh05G009520.1 Cmo05g00952 383087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00952 272 MobiDBLite consensus disorder prediction 249 272 - -
Cmo05g00952 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmo05g00952 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 69 272 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmo05g00952 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 69 272 - -
Cmo05g00952 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677|GO:0006355
Cmo05g00952 272 Gene3D Transcriptional Coactivator Pc4; Chain A 80 255 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00952 - - - csv:101203474 451.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00923 Cmo-Chr1:5228431 Cmo05g00952 Cmo-Chr5:7664738 1.03E-47 transposed
Cmo12g00648 Cmo-Chr12:4168500 Cmo05g00952 Cmo-Chr5:7664738 3.38E-159 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00648 . 69 275 Whirly Transcription Factor Family AT1G14410 70.0 7.6e-87 317.8
Cmo05g00952 . 69 272 Whirly Transcription Factor Family AT1G14410 71.9 1.3e-86 317.0
Cmo01g00923 . 41 213 Whirly Transcription Factor Family AT1G71260 61.8 1.4e-58 223.8
Cmo12g00648 . 80 244 Whirly Transcription Factor Family AT1G71260 50.6 4.2e-44 175.6
Cmo05g00952 . 68 272 Whirly Transcription Factor Family AT2G02740 73.3 2.0e-87 319.7
Cmo12g00648 . 47 275 Whirly Transcription Factor Family AT2G02740 66.5 5.0e-86 315.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9850 PF08536 Whirly 8.00E-60 CL0609 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00952 Cmo_Chr05 FPKM 32.477142 36.366676 27.469267 30.290041 21.02829 20.154243 22.653692 32.615524 34.62112 37.313183