Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00962 ATGGCCGGGTTTAGAATCTTGTTCGTCTTCTCGTTGTTGTACTTTGTCGCGGCATATACCGATGCCAATGTCGATGTCGATGACCATGATGAATATTGGCTCACTCGTGCTAATGAGGCTAAGAAAGTAGCCCAAGATGCCTACAATCCTAAGCCAGAAAGCGTCACTGAGCATTTGAACGTCGCCGTCCGTCTGGCGATGGTGGGTGACAATAGTACAAGAAGGAGTCTCAATAAATATAAAGGACCATGTTTGAAGACAAACCCGATCGATAGATGCTGGAGATGCGATAAAAATTGGGCTAACAATCGAAAGAAGCTAGCCGAGTGCCCGTTAGGGTTTGGCCATCAAACCATCGGCGGAAAGAGAGGACGCATCTACGTGGTGACCGACGCATCTGATGATAACTTGGTTGACCCCAAGCCCGGAACCCTCCGCCATGGCGTGATTCAAAAAGGTCCACTTTGGATCATTTTTGGACGTAGCATGGTCATCAGGCTAGCCCAAGAGCTGATGATCTCAAGCGACAAAACCATCGATGCTCGTGGCTTTAATGTTCACATTGCCTATGGCGCTGGCCTCACCATTCAATTCGCCCACAATGTTATCATCCATGGCCTTCACATCCATAATATCATCTCCAAATCCGGTGGCTATATTAGAGATTCCGTTGATCATTATGGATTTAGAACACAAAGCGATGGCGATGGTATCTCCATCTTTGGCTCTTCTCATATATGGATCGACCATGTTTCCATGTATGCATGCCAAGACGGCCTCATCGATGCCATCATGGGTTCCACCGGCATCACCATTTCCAATAGTCATTTCACTCATCACAACGAGGCGATGTTATTCGGAGCAAGCGATAGCTACAAAGAGGACGAGATCATGCAAATAACCCTCGCATTCAACCACTTCGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTAAACAATGACTACACCCATTGGCTAATGTATGCCATCGGAGGTAGTCAACATCCAACCATCGTGAGCCAAGGCAACCGATTCATTGCGCCACAGAACATCAATGCAAAAACGATAACAAAGAGAGAGTATGCAGATGAGAGTGAGTGGAAGAAGTGGTCGTGGAGATCGGAAGGGGATTTGTTGTTGAATGGTGCGGTGTTTGTTGGGTCGGGAGACCAAACCAAAGGGAAGAAGAAGGACTTGTCGAGATATGACATGATTTCGTTCAAGCCAGGGTCTTATGTGAAGAGACTTGTACGCTTCGCGGGAACACTTGAATGTCGTGTAGGCAAACCATGCTAG 1320 47.27 MAGFRILFVFSLLYFVAAYTDANVDVDDHDEYWLTRANEAKKVAQDAYNPKPESVTEHLNVAVRLAMVGDNSTRRSLNKYKGPCLKTNPIDRCWRCDKNWANNRKKLAECPLGFGHQTIGGKRGRIYVVTDASDDNLVDPKPGTLRHGVIQKGPLWIIFGRSMVIRLAQELMISSDKTIDARGFNVHIAYGAGLTIQFAHNVIIHGLHIHNIISKSGGYIRDSVDHYGFRTQSDGDGISIFGSSHIWIDHVSMYACQDGLIDAIMGSTGITISNSHFTHHNEAMLFGASDSYKEDEIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPQNINAKTITKREYADESEWKKWSWRSEGDLLLNGAVFVGSGDQTKGKKKDLSRYDMISFKPGSYVKRLVRFAGTLECRVGKPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7722814 7724424 + CmoCh05G009620.1 Cmo05g00962 383097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00962 439 PANTHER PECTATE LYASE 18-RELATED 5 439 IPR045032 GO:0030570
Cmo05g00962 439 PANTHER PECTATE LYASE 5 439 - -
Cmo05g00962 439 Pfam Pectate lyase, N terminus 27 77 IPR007524 GO:0030570
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Cmo05g00962 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Cmo05g00962 439 Pfam Pectate lyase 194 353 IPR002022 -
Cmo05g00962 439 Gene3D - 87 432 IPR012334 -
Cmo05g00962 439 SMART amb_all 162 359 IPR002022 -
Cmo05g00962 439 SUPERFAMILY Pectin lyase-like 78 433 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01712 Cmo-Chr4:8678089 Cmo05g00962 Cmo-Chr5:7722814 0 dispersed
Cmo05g00962 Cmo-Chr5:7722814 Cmo12g00634 Cmo-Chr12:4004691 0 dispersed
Cmo05g00962 Cmo-Chr5:7722814 Cmo11g01064 Cmo-Chr11:5919240 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00962 K01728 - csv:101217922 738.799