Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00967 ATGTCTACCTCTAGACCTAGTCAGTCTTCTAGCAACTCTGGGCGGTCCAGACATAGCACTAGAATTATTGCTCAAACATCTGTTGATGCAAAGCTGCAAGCTGATTTTGAGGAATCTGGGAATTCGTTTGACTACTCAAGTTCAGTGCGTGTCACTAGTGATGTTAGCGGAGATCAACAGCCTAGGTCAGACAAAGTTACTACAGCTTATCTCCATCATATTCAGAAAGGCAAACTTATCCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGCACAGATGTAAGGACTATTTTCACTGCACCTAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGAGAGGTTACACTTCTTAATCCTATCCTGGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTTCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGGTCCAGTGACTGCAGCTGGAGCTCTACAATCATATAAACTTGCCGCCAAAGCGATTACTAGATTGCAGTCTTTGCCTAGTGGAAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATCGAGTTATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCCGGCCTTCAGCCATATCTTGGTTTGCATTATCCAGCAACTGACATTCCTCAAGCTGCACGTTTTTTGTTCATGAAAAATAAGGTCCGGATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGTGGTTCAACTTTAAGAGCTCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATAGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGAAAATGAAGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGCTTGGTAGTATGTCATAATTCAAGTCCCAGATTTGTTCCGTTTCCTCTTAGGTATGCTTGTGAGTTCCTAGCTCAAGTATTTGCTATTCATGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAGAATATTCTGCGTACGCAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCGAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAAAAAAATTTGGCGATTAGGAATGACACCTAATGACTTCCAGTTGCTGGACATAGCCTCGTGGCTTTCCGAGTATCATATGGATTCAACGGGGTTGAGTACTGACAGTTTGTATGATGCAGGATACCCAGGAGCTATTGCTTTAGGAGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGACATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTCAAAAGGATGATGCTAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCCTGGAAGGACTATGAGATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTTAAGGATACAGATGCAACTGAAATAAATAGAAAATCAATTCAAACAACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCCGGTTAATCGAGACAGCTACTGTGCCGATTTTAGCTGTTGATTTAGATGGGTTAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTGCCTGTGGATAAAGCTATCGGCAAGCATTTACTTACGTTAGTGGAAGATTCATCTGTAGAAGTTGTCAGGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTCGAGATCAAGACACACGGTTCTCACATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTCGTGGGTGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTAATGGACAAGTTCACTCGATTAGAAGGCGATTACAAAGCCATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGATCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGGCGAAATTAACTGGGTGGTCACGTGAAGAAGTAATCGATAAGATGCTTTTGGGAGAGGTTTTTGGTGTTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGATTGTCTTGAACAATGCCATGTGTGGTCAAGATCCTGAGAAGGCTTCCTTTGGTTTCTTAGCTCGGAACGGGATGTACGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAAAGATGGCGCGGTTACAGGGTTCTTTTGCTTTTTGCAGCTTCCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGCTTATGTGAGCAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGACAGGTTCAAAATCCTCTATCTGGGATAATCTTTTCAAGAAGATTATTGGAGCGCACCGAGTTGGGAGTAGAACAAAAAGAACTTCTGCGTACTAGCGGACTCTGTCAAAAGCAGATCTCCAAGGTTCTCGATGAGTCGGACATCGATAAAATTATTGATGGGTTTGTTGATTTAGAAATGGACGAGTTTACATTGCATGAAGTATTGATGGTATCAATTAGTCAAGTGATGCTAAAGATTAAAGGAAAGGGTATCCAGATAGTTAATGAGACTCCAGAAGAGGCTATGTCCGAGACCTTATATGGAGATAGTTTAAGGCTTCAACAAGTCTTGGCGGACTTTCTATTGATATCAGTTAGTTATGCGCCTTCAGGATGCCAACTAACAATTTCAACCGATGTGACCAAGAATCAATTAGGAAAGTCGGTGCATCTGGTGCATTTGGAGTTCAGGATAACATATGCTGGAGGAGGTATACCAGAGTCGTTGCTGAACGAGATGTTTGGAAGTGAGGAGGACGCGTCCGAAGAGGGTTTCAGTCTGCTCATCAGTAGAAAGCTGGTGAAGCTGATGAACGGAGATGTACGATATATGAGGGAAGCCGGGAAGTCGAGCTTCATCATAACTGTCGAGCTTGCTGCAGCTCACAAGTCAAGGACAACGTAG 3375 41.75 MSTSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEGPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEENEGPALQQQKRKRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKKKIWRLGMTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVNKILDKDGAVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGYIKRQVQNPLSGIIFSRRLLERTELGVEQKELLRTSGLCQKQISKVLDESDIDKIIDGFVDLEMDEFTLHEVLMVSISQVMLKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLADFLLISVSYAPSGCQLTISTDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRTT 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7775625 7781005 - CmoCh05G009670.1 Cmo05g00967 383102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00967 1124 SMART gaf_1 218 410 IPR003018 GO:0005515
Cmo05g00967 1124 ProSiteProfiles Histidine kinase domain profile. 900 1119 IPR005467 -
Cmo05g00967 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Cmo05g00967 1124 SMART HisKA_10 893 954 IPR003661 GO:0000155|GO:0007165
Cmo05g00967 1124 Pfam GAF domain 219 400 IPR003018 GO:0005515
Cmo05g00967 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Cmo05g00967 1124 MobiDBLite consensus disorder prediction 39 64 - -
Cmo05g00967 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Cmo05g00967 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Cmo05g00967 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Cmo05g00967 1124 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Cmo05g00967 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355
Cmo05g00967 1124 SMART pas_2 748 817 IPR000014 -
Cmo05g00967 1124 SMART pas_2 618 684 IPR000014 -
Cmo05g00967 1124 Gene3D PAS domain 74 321 - -
Cmo05g00967 1124 SMART HKATPase_4 1005 1117 IPR003594 -
Cmo05g00967 1124 Gene3D - 199 561 IPR029016 -
Cmo05g00967 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1119 - -
Cmo05g00967 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo05g00967 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Cmo05g00967 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Cmo05g00967 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Cmo05g00967 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Cmo05g00967 1124 Gene3D - 956 1121 IPR036890 -
Cmo05g00967 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Cmo05g00967 1124 MobiDBLite consensus disorder prediction 1 24 - -
Cmo05g00967 1124 SUPERFAMILY GAF domain-like 198 397 - -
Cmo05g00967 1124 Gene3D - 405 578 IPR043150 -
Cmo05g00967 1124 PANTHER PHYTOCHROME A 1 1119 - -
Cmo05g00967 1124 Coils Coil 397 417 - -
Cmo05g00967 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1112 IPR036890 -
Cmo05g00967 1124 CDD PAS 627 733 IPR000014 -
Cmo05g00967 1124 Gene3D PAS domain 611 748 - -
Cmo05g00967 1124 SUPERFAMILY GAF domain-like 408 585 - -
Cmo05g00967 1124 CDD PAS 760 871 IPR000014 -
Cmo05g00967 1124 Gene3D PAS domain 763 875 - -
Cmo05g00967 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355
Cmo05g00967 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355
Cmo05g00967 1124 TIGRFAM sensory_box: PAS domain S-box protein 623 739 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00967 Cmo-Chr5:7775625 Cmo14g01619 Cmo-Chr14:12864015 0 dispersed
Cmo19g00869 Cmo-Chr19:8367133 Cmo05g00967 Cmo-Chr5:7775625 0 transposed
Cmo12g00639 Cmo-Chr12:4071927 Cmo05g00967 Cmo-Chr5:7775625 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00967 K12120 - csv:101208491 2076.98