Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00982 ATGTCGGGATCTGAAGGTGGCGTGATGACCAGTAGAGAATCCTTCAATGTCGCCGTTCAAAATAGTTCGTTACAGTCGCAGCCGGCGGCCCAAAATATGCGATTATCCTTCAGTGCCGATGGCACAGCCGTCTACAAACCTGTGACTGTGACTCCGACTCCGACTCCGACTCCGACTCCGACTCCGACACCTTCAACTTTACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGTAAGGAGGGATCGGCTGGTGGTGGGTCGATACTGCCTCATGATTTGAATATAAACTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGAAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTGGGTTCTGGGCAGCCATCAAGAAGTGGAGCTTCTGAAGGAGGATTGGGCTCACCAAATTCATTGAAAAAAAGTAAAGGCAGGCCATCTGGTTCTAAGAAAAAGCGACAATTGGAAGCTTTGGGACCGGCTGGTTTTGGATTCACTCCACATGTTATCGATGTGAAAGCTGGAGAGGATATATCGTCAAAAATAATGTCCTTTTCTCACAATGGCCCCAGGGCTATTTGTATCCTTTCAGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTCACTTATGAGGGGCGGTTTGAAATTTTGTCACTTTCAGGTTCATTTCTCCTCTCCGACAATGGTGGTCAGAGAAGCAGAGCTGGTGGTTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGCGGCGTCGCGGGTCTTCTTACAGCTTCATCTCCTGTTCAGGTGGTAGTGGGAAGTTTCATAGTCGACAGCAACAAGGAACCAAAGCCAGCCCGCCAAACTGAACCCACAACAGCCTCGCCAATGCTAAACCAAGTCGCCTTTGGTCACTTGACCGGAGGAGCCAGTAGTCCATCGCACGGGACGCTGAGCGAGTCTTCCGGTGGCGGACCTGGCAGCCCCCTCAACAACAGCTCAGGAGCCTGCAACAACAGCAGCATCCATCCACAGACAATGTCCGGCATGCCATGGAACAAACTAATTTTTGGTAAAAAAGTGTTCAGTCTTGTCGTGATACTAGCAAAATCAAGTAAAGGAGAGGTTCAATTTGTAATGTTTTGTTCGTCAAAGGGCTTGGCTGATTGTTACATTGAGTCATGTGGTTAG 1233 49.39 MSGSEGGVMTSRESFNVAVQNSSLQSQPAAQNMRLSFSADGTAVYKPVTVTPTPTPTPTPTPTPSTLPSYQSSMAGVSGNAGKEGSAGGGSILPHDLNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGQPSRSGASEGGLGSPNSLKKSKGRPSGSKKKRQLEALGPAGFGFTPHVIDVKAGEDISSKIMSFSHNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSDNGGQRSRAGGLSVSLSGPDGRVLGGGVAGLLTASSPVQVVVGSFIVDSNKEPKPARQTEPTTASPMLNQVAFGHLTGGASSPSHGTLSESSGGGPGSPLNNSSGACNNSSIHPQTMSGMPWNKLIFGKKVFSLVVILAKSSKGEVQFVMFCSSKGLADCYIESCG 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7907590 7911010 + CmoCh05G009820.1 Cmo05g00982 383117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00982 410 MobiDBLite consensus disorder prediction 323 356 - -
Cmo05g00982 410 CDD DUF296 175 289 IPR005175 -
Cmo05g00982 410 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 357 IPR039605 GO:0003680
Cmo05g00982 410 MobiDBLite consensus disorder prediction 48 161 - -
Cmo05g00982 410 MobiDBLite consensus disorder prediction 51 65 - -
Cmo05g00982 410 SUPERFAMILY AF0104/ALDC/Ptd012-like 174 290 - -
Cmo05g00982 410 Pfam Plants and Prokaryotes Conserved (PCC) domain 176 289 IPR005175 -
Cmo05g00982 410 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 357 - -
Cmo05g00982 410 Gene3D - 176 325 - -
Cmo05g00982 410 MobiDBLite consensus disorder prediction 128 152 - -
Cmo05g00982 410 ProSiteProfiles PPC domain profile profile. 170 310 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02098 Cmo05g00982 CCT
Cmo05g00982 Cmo12g00629 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01652 Cmo-Chr2:9527908 Cmo05g00982 Cmo-Chr5:7907590 1.81E-53 dispersed
Cmo05g00982 Cmo-Chr5:7907590 Cmo16g01203 Cmo-Chr16:8608087 3.22E-72 dispersed
Cmo01g02098 Cmo-Chr1:14534772 Cmo05g00982 Cmo-Chr5:7907590 2.00E-107 wgd
Cmo12g00629 Cmo-Chr12:3929478 Cmo05g00982 Cmo-Chr5:7907590 4.41E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00982 - - csv:101211767 494.967