Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00988 ATGGTTTTGGGATTCATTTCTTTACTCTTAACATTCGGACAAAACTATATTGCTGAAGTTTGCATACCCTCAAGGTATGCAAATACCATGTTGCCTTGCCCTTATAGAGGGAAATCACATCAAAGCTCCCATGGCATCGAACCCGAAGAACACGAGGAAGACGCCCACGATCACCACCGTAGGCTTCTTTGGTACGAGCATCGACGTCTCGGCGGTGGTGGTCACGTAGAAAGTTGCAAACCAGGATATATGCAACTTATATCTCTAAATGGTTTGCATCAATTACATATCTTCATCTTCTTTCTAGCCGTTCTCCATGTTGTCTTTAGCGGCATAACGATGACTCTCGGAAGATTGAAAATTCGTGGATGGAAAGTATGGGAAAGACAGACTGAACTAGAACATGAAGCCATGAACGATCCTACAAGGTTCCGACTTACTCACGAGACATCGTTTGTAAGAGATCACATTAGTAGAGCCGATTACTTGTCTCTTAGACATGGTTTCGTCACGGTTCATTTAGCACCTGGGAGTAAATTTGACTTCCAAAAGTACATCAAAAGGTCATTAGAAGATGACTTCAAGGTGGTCGTCGGAATCAGTCCTCTACTATGGGCATCAATGGTGCTTTTTCTGCTTCTCAATGTTAGTGGGTGGCAAGTTATGCTTTGGGTGTCCATATTTCCTCTGGTGGTGATCCTAGCCGTCGGAACAAAGCTGCAAGGAATCATAACACAAATGGCGCTTGAAATCAAGGAAAGGCACGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCCGATAGACACTTCTGGTTCAGTTGGCCCGTTTTGGTTCTGTATCTCATCCATTACGTCCTCTTCCAGAATGCATTTGAGATTACATATTTCTTTTGGATATGGTATGAATTTGGATTGAGATCATGCTTTCACCAAAATTTTGATCTTATTATCGTCAGAGTTGCCCTTGGAAGTGCTTTGAAGAAAAAGAATGAAGGGGGAAAGCCAGATCCAATGCCAATGCGAACACTGGGCGGGGGCGGAGGCGGAGGCAGTGGAAGCCCTCCCGAGTCACCGTCGGAAGACTCGCATGAGTTCCAGCATCATGCAGACCCTCTACGACCACCCAACGACGTCGAAGCCTCCGCTGTTCCTTCGGCCAACATAATTGCCACCGTCGATCTTCAGCAACAGCAGAATTACGCGAACCTCTTGGTAAGAGGGGGAAGGGTTAAGGATTTACTCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCT 1317 46.01 MVLGFISLLLTFGQNYIAEVCIPSRYANTMLPCPYRGKSHQSSHGIEPEEHEEDAHDHHRRLLWYEHRRLGGGGHVESCKPGYMQLISLNGLHQLHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWERQTELEHEAMNDPTRFRLTHETSFVRDHISRADYLSLRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVSGWQVMLWVSIFPLVVILAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQNAFEITYFFWIWYEFGLRSCFHQNFDLIIVRVALGSALKKKNEGGKPDPMPMRTLGGGGGGGSGSPPESPSEDSHEFQHHADPLRPPNDVEASAVPSANIIATVDLQQQQNYANLLVRGGRVKDLLGVRYHIVRGTLDAVGVKDRQQGRS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7954924 7959648 - CmoCh05G009880.1 Cmo05g00988 383123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00988 439 MobiDBLite consensus disorder prediction 329 378 - -
Cmo05g00988 439 PRINTS Ribosomal protein S12 signature 401 418 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cmo05g00988 439 PRINTS Ribosomal protein S12 signature 418 434 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cmo05g00988 439 PRINTS Ribosomal protein S12 signature 434 439 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cmo05g00988 439 SUPERFAMILY Nucleic acid-binding proteins 398 439 IPR012340 -
Cmo05g00988 439 Gene3D - 386 439 IPR012340 -
Cmo05g00988 439 Pfam Mlo family 157 326 IPR004326 GO:0006952|GO:0016021
Cmo05g00988 439 Pfam Mlo family 1 158 IPR004326 GO:0006952|GO:0016021
Cmo05g00988 439 MobiDBLite consensus disorder prediction 361 375 - -
Cmo05g00988 439 PANTHER MLO-LIKE PROTEIN 5-RELATED 1 326 - -
Cmo05g00988 439 PANTHER MLO-LIKE PROTEIN 1 1 326 IPR004326 GO:0006952|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00988 K08472 MLO; mlo protein - csv:101208890 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00988 Cmo-Chr5:7954924 Cmo07g00374 Cmo-Chr7:1715847 1.99E-153 dispersed
Cmo12g00776 Cmo-Chr12:6188537 Cmo05g00988 Cmo-Chr5:7954924 5.43E-08 dispersed
Cmo05g00988 Cmo-Chr5:7954924 Cmo03g00647 Cmo-Chr3:5880248 6.62E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g64 . . . . . . . . Cmo05g00988 . . . . . . . . . . . . . . . Cla08g00934 Cam08g1381 Cec08g0962 Cco08g1081 Clacu08g1088 . Cre08g0871 Cone4ag2032 . . . . . . . . Blo18g00738 . Bda01g01568 Bpe02g01762 Bpe05g00178 Bma01g00695 . . . . . . Car05g00852 . Cpe11g00780 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00329 . 2 553 MLO family AT5G53760 69.6 2.9e-216 748.8
Cmo01g01256 CST 5 548 MLO family AT5G53760 69.9 1.0e-213 740.3
Cmo09g00864 CST 10 372 MLO family AT5G53760 71.7 1.3e-147 520.8
Cmo13g00190 CCT,ECH 12 451 MLO family AT3G45290 59.3 1.9e-139 493.4
Cmo01g00568 . 10 479 MLO family AT3G45290 54.5 2.8e-138 489.6
Cmo15g00329 . 3 553 MLO family AT1G26700 68.3 2.1e-211 732.6
Cmo01g01256 CST 1 551 MLO family AT1G26700 67.4 7.4e-209 724.2
Cmo09g00864 CST 1 372 MLO family AT1G26700 68.4 2.0e-145 513.5
Cmo18g00890 . 7 495 MLO family AT2G39200 66.8 2.9e-192 669.1
Cmo13g00188 . 8 536 MLO family AT2G39200 63.6 2.5e-191 666.0
Cmo20g00511 CCT,CST,ECH 8 509 MLO family AT2G39200 67.2 3.6e-190 662.1
Cmo04g01433 . 7 525 MLO family AT2G39200 64.4 1.4e-189 660.2
Cmo02g00883 CCT,CST,ECH 8 503 MLO family AT2G39200 65.9 9.2e-186 647.5
Cmo13g00190 CCT,ECH 7 451 MLO family AT2G39200 51.1 4.8e-134 475.7
Cmo20g00511 CCT,CST,ECH 8 414 MLO family AT1G61560 67.8 2.5e-161 565.8
Cmo02g00883 CCT,CST,ECH 8 414 MLO family AT1G61560 67.3 1.1e-159 560.5
Cmo13g00188 . 8 416 MLO family AT1G61560 66.9 9.0e-159 557.4
Cmo18g00890 . 7 404 MLO family AT1G61560 65.2 2.3e-154 542.7
Cmo04g01433 . 7 408 MLO family AT1G61560 65.0 6.2e-152 534.6
Cmo03g00647 CST 30 427 MLO family AT1G61560 52.2 1.1e-116 417.5
Cmo07g00374 CST 28 424 MLO family AT1G61560 53.2 5.5e-116 415.2
Cmo06g00158 . 30 396 MLO family AT1G61560 51.8 3.7e-104 375.9
Cmo07g00374 CST 10 492 MLO family AT2G17430 61.4 1.6e-168 590.1
Cmo03g00647 CST 12 495 MLO family AT2G17430 60.6 8.1e-168 587.8
Cmo06g00158 . 30 476 MLO family AT2G17430 60.9 2.4e-151 533.1
Cmo02g00883 CCT,CST,ECH 7 456 MLO family AT2G17430 50.4 3.0e-122 436.4
Cmo05g00988 . 1 320 MLO family AT2G17430 54.4 1.6e-99 360.9
Cmo03g00647 CST 2 572 MLO family AT2G17480 62.4 1.3e-195 680.2
Cmo07g00374 CST 28 569 MLO family AT2G17480 64.2 5.5e-194 674.9
Cmo06g00158 . 5 559 MLO family AT2G17480 56.0 6.1e-169 591.7
Cmo13g00188 . 8 457 MLO family AT2G17480 52.7 5.4e-125 445.7
Cmo20g00511 CCT,CST,ECH 8 461 MLO family AT2G17480 50.2 1.0e-123 441.4
Cmo05g00988 . 1 323 MLO family AT2G17480 56.7 7.4e-106 382.1
Cmo07g00374 CST 28 388 MLO family AT1G42560 59.9 8.1e-122 434.5
Cmo03g00647 CST 30 391 MLO family AT1G42560 58.0 1.7e-119 426.8
Cmo06g00158 . 30 389 MLO family AT1G42560 56.7 4.1e-110 395.6
Cmo05g00988 . 1 289 MLO family AT1G42560 57.8 1.5e-96 350.5
Cmo08g00962 . 6 415 MLO family AT4G24250 54.5 1.4e-116 417.2
Cmo17g00046 . 6 419 MLO family AT4G24250 53.5 1.0e-114 411.0
Cmo20g01057 . 10 418 MLO family AT4G24250 51.1 5.7e-110 395.2
Cmo03g00647 CST 7 392 MLO family AT5G65970 64.2 6.1e-143 505.0
Cmo07g00374 CST 8 389 MLO family AT5G65970 63.9 2.4e-139 493.0
Cmo06g00158 . 29 389 MLO family AT5G65970 65.7 2.5e-136 483.0
Cmo20g00511 CCT,CST,ECH 2 379 MLO family AT5G65970 51.6 1.3e-105 380.9
Cmo02g00883 CCT,CST,ECH 2 379 MLO family AT5G65970 50.3 2.1e-103 373.6
Cmo05g00988 . 1 289 MLO family AT5G65970 55.6 1.0e-89 328.2
Cmo07g00374 CST 28 472 MLO family AT2G33670 61.3 5.0e-156 548.5
Cmo03g00647 CST 22 475 MLO family AT2G33670 59.9 8.6e-156 547.7
Cmo06g00158 . 30 454 MLO family AT2G33670 55.4 4.0e-129 459.1
Cmo13g00188 . 6 482 MLO family AT2G33670 50.1 4.9e-127 452.2
Cmo05g00988 . 1 324 MLO family AT2G33670 61.2 3.6e-114 409.5
Cmo18g00890 . 64 520 MLO family AT1G11310 62.8 2.8e-170 595.9
Cmo13g00188 . 63 506 MLO family AT1G11310 65.8 1.2e-165 580.5
Cmo20g00511 CCT,CST,ECH 63 518 MLO family AT1G11310 62.7 1.8e-164 576.6
Cmo04g01433 . 64 572 MLO family AT1G11310 58.8 3.3e-163 572.4
Cmo02g00883 CCT,CST,ECH 63 518 MLO family AT1G11310 61.7 2.4e-161 566.2
Cmo17g00046 . 1 508 MLO family AT2G44110 59.6 1.4e-166 583.6
Cmo08g00962 . 1 498 MLO family AT2G44110 59.8 1.1e-163 573.9
Cmo17g00046 . 1 489 MLO family AT4G02600 76.1 7.3e-214 740.7
Cmo08g00962 . 1 506 MLO family AT4G02600 72.8 1.6e-213 739.6
Cmo04g00571 . 4 499 MLO family AT1G11000 54.8 5.4e-154 542.0
Cmo16g01287 . 1 451 MLO family AT1G11000 54.8 2.2e-131 466.8
Cmo09g00864 CST 3 372 MLO family AT1G11000 50.8 2.0e-92 337.4
Cmo17g00046 . 1 489 MLO family AT4G02600 76.1 7.3e-214 740.7
Cmo08g00962 . 1 506 MLO family AT4G02600 72.8 1.6e-213 739.6
Cmo18g00890 . 64 520 MLO family AT1G11310 62.8 2.8e-170 595.9
Cmo13g00188 . 63 506 MLO family AT1G11310 65.8 1.2e-165 580.5
Cmo20g00511 CCT,CST,ECH 63 518 MLO family AT1G11310 62.7 1.8e-164 576.6
Cmo04g01433 . 64 572 MLO family AT1G11310 58.8 3.3e-163 572.4
Cmo02g00883 CCT,CST,ECH 63 518 MLO family AT1G11310 61.7 2.4e-161 566.2
Cmo13g00190 CCT,ECH 12 451 MLO family AT3G45290 59.3 1.9e-139 493.4
Cmo01g00568 . 10 479 MLO family AT3G45290 54.5 2.8e-138 489.6
Cmo04g00571 . 4 499 MLO family AT1G11000 54.8 5.4e-154 542.0
Cmo16g01287 . 1 451 MLO family AT1G11000 54.8 2.2e-131 466.8
Cmo09g00864 CST 3 372 MLO family AT1G11000 50.8 2.0e-92 337.4
Cmo07g00374 CST 28 472 MLO family AT2G33670 61.3 5.0e-156 548.5
Cmo03g00647 CST 22 475 MLO family AT2G33670 59.9 8.6e-156 547.7
Cmo06g00158 . 30 454 MLO family AT2G33670 55.4 4.0e-129 459.1
Cmo13g00188 . 6 482 MLO family AT2G33670 50.1 4.9e-127 452.2
Cmo05g00988 . 1 324 MLO family AT2G33670 61.2 3.6e-114 409.5
Cmo20g00511 CCT,CST,ECH 8 414 MLO family AT1G61560 67.8 2.5e-161 565.8
Cmo02g00883 CCT,CST,ECH 8 414 MLO family AT1G61560 67.3 1.1e-159 560.5
Cmo13g00188 . 8 416 MLO family AT1G61560 66.9 9.0e-159 557.4
Cmo18g00890 . 7 404 MLO family AT1G61560 65.2 2.3e-154 542.7
Cmo04g01433 . 7 408 MLO family AT1G61560 65.0 6.2e-152 534.6
Cmo03g00647 CST 30 427 MLO family AT1G61560 52.2 1.1e-116 417.5
Cmo07g00374 CST 28 424 MLO family AT1G61560 53.2 5.5e-116 415.2
Cmo06g00158 . 30 396 MLO family AT1G61560 51.8 3.7e-104 375.9
Cmo07g00374 CST 10 492 MLO family AT2G17430 61.4 1.6e-168 590.1
Cmo03g00647 CST 12 495 MLO family AT2G17430 60.6 8.1e-168 587.8
Cmo06g00158 . 30 476 MLO family AT2G17430 60.9 2.4e-151 533.1
Cmo02g00883 CCT,CST,ECH 7 456 MLO family AT2G17430 50.4 3.0e-122 436.4
Cmo05g00988 . 1 320 MLO family AT2G17430 54.4 1.6e-99 360.9
Cmo03g00647 CST 2 572 MLO family AT2G17480 62.4 1.3e-195 680.2
Cmo07g00374 CST 28 569 MLO family AT2G17480 64.2 5.5e-194 674.9
Cmo06g00158 . 5 559 MLO family AT2G17480 56.0 6.1e-169 591.7
Cmo13g00188 . 8 457 MLO family AT2G17480 52.7 5.4e-125 445.7
Cmo20g00511 CCT,CST,ECH 8 461 MLO family AT2G17480 50.2 1.0e-123 441.4
Cmo05g00988 . 1 323 MLO family AT2G17480 56.7 7.4e-106 382.1
Cmo07g00374 CST 28 388 MLO family AT1G42560 59.9 8.1e-122 434.5
Cmo03g00647 CST 30 391 MLO family AT1G42560 58.0 1.7e-119 426.8
Cmo06g00158 . 30 389 MLO family AT1G42560 56.7 4.1e-110 395.6
Cmo05g00988 . 1 289 MLO family AT1G42560 57.8 1.5e-96 350.5
Cmo03g00647 CST 7 392 MLO family AT5G65970 64.2 6.1e-143 505.0
Cmo07g00374 CST 8 389 MLO family AT5G65970 63.9 2.4e-139 493.0
Cmo06g00158 . 29 389 MLO family AT5G65970 65.7 2.5e-136 483.0
Cmo20g00511 CCT,CST,ECH 2 379 MLO family AT5G65970 51.6 1.3e-105 380.9
Cmo02g00883 CCT,CST,ECH 2 379 MLO family AT5G65970 50.3 2.1e-103 373.6
Cmo05g00988 . 1 289 MLO family AT5G65970 55.6 1.0e-89 328.2
Cmo15g00329 . 2 553 MLO family AT5G53760 69.6 2.9e-216 748.8
Cmo01g01256 CST 5 548 MLO family AT5G53760 69.9 1.0e-213 740.3
Cmo09g00864 CST 10 372 MLO family AT5G53760 71.7 1.3e-147 520.8
Cmo18g00890 . 7 495 MLO family AT2G39200 66.8 2.9e-192 669.1
Cmo13g00188 . 8 536 MLO family AT2G39200 63.6 2.5e-191 666.0
Cmo20g00511 CCT,CST,ECH 8 509 MLO family AT2G39200 67.2 3.6e-190 662.1
Cmo04g01433 . 7 525 MLO family AT2G39200 64.4 1.4e-189 660.2
Cmo02g00883 CCT,CST,ECH 8 503 MLO family AT2G39200 65.9 9.2e-186 647.5
Cmo13g00190 CCT,ECH 7 451 MLO family AT2G39200 51.1 4.8e-134 475.7
Cmo08g00962 . 6 415 MLO family AT4G24250 54.5 1.4e-116 417.2
Cmo17g00046 . 6 419 MLO family AT4G24250 53.5 1.0e-114 411.0
Cmo20g01057 . 10 418 MLO family AT4G24250 51.1 5.7e-110 395.2
Cmo15g00329 . 3 553 MLO family AT1G26700 68.3 2.1e-211 732.6
Cmo01g01256 CST 1 551 MLO family AT1G26700 67.4 7.4e-209 724.2
Cmo09g00864 CST 1 372 MLO family AT1G26700 68.4 2.0e-145 513.5
Cmo17g00046 . 1 508 MLO family AT2G44110 59.6 1.4e-166 583.6
Cmo08g00962 . 1 498 MLO family AT2G44110 59.8 1.1e-163 573.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00988 Cmo_Chr05 FPKM 12.841226 11.048056 2.438565 1.99324 15.883039 16.9137 15.452269 17.853443 19.541134 18.246908