Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00989 ATGTCGAAAAGGCTCATGAGAAGCATGAGCCAGAAATTGAGGAGGAAGAATAACAAAGGTGTTGCTGAGGAAGAGGATATTTCAAGGGGAATATCTTTGAGATGTCTTACATTATATGGTAGAGGTGGAGGTTGCAAAGTTGGGGCCGACACCGGTGAGGAAATTGGTGACCCAGGCAGTCGAAGAAGATCCAGTGCCAGTGAGGAAGGTAAGGGATACAAATCATTATTCAGTACTGAAGAAAATGGTGTGGATTGCTTCTCATATGGTGTAAAGGAGAGATTTCGTAAGAAACATAGCCCGAAGCATTCCGGACTTCGGAACTCTACGAGGAGCAGTGACGTTCATATTTTTCTTCCTGATGACATTCTGGAAATGTGCTTGATGAGGCTACCACTTTCGAGTCTCATGAATGCTCGCCTTGTATGCAAAAAGTGGAGATACTTGACTAGCACTCGTCGGTTTTTACAGATGAGACGGGAATGTTTATATCAGACTCCATGGATATTTTTATTTGGTGCTGTTAAAGAGGGTTATTGCTCGGGCGAGATACACGCACTGGATGTATCTCTAAAGAAATGGCATAGAATAGATGCTGATATTCTCAAGGGAAGATTTGTGTTCTCTCTAGCCAGTATCCAGGACGATATATATATCGTTGGTGGATGTTCTAGCTTGGCTAACTTCGGAAAAGTCGATAAGAGCTCCTTCAGAACACATAAAGGGGTCTTAGTGTTTAGTCCTTTAACTAATTCTTGGAGGAAAATTGCGTCTATGAAGCATGCCAGATCAATGCCTATATTAGGAACTTCTGAGGTTAACTCAGAATTTTCAGTAGTTCCGAGCCATCATAATCGGCAAGATAGACGTTATTTGAGATCACGTGCCGGTGGTTCATTGGATGTTTATGAGGATCCTCACAGGCTCTCGTTAAGACGTCAAGCCAGAAATCCTTTGGAAGACAATGATGCTTCAATGTTGTCTAATAGGAAGTCATATAAGTTCAGTCGACAAAAGAGCGAACAGTCTCGTGCGAAAGGACATCGTAGGTTTGTGATTATTGCAATTGGCGGTCTAGGATCTTGGGATGAACCGATAGAGTCGGGGGAGATTTATGATTCCTCATCAAACAAATGGACAGAAATTCAGAGGCTTCCTGTAGATTTCGGTGTTATATGTTCTGGGGTTGTCTGCAATGGGATCTTCTATGTTTATTCTGAGACAGACAGACTTGCAGGTTATGACATCGAAAGAGGCTTTTGGATCGGAATCCAAACATCTCCATTCCCGCCTCGTGTTCATGAGTACTACCCGAAAATTGTATCCTCCAATGGTCGGCTGTTCATGCTTTCTGTCTCCTGGTGCGAAGGGGATGGACAAATAGGGCAGAGAAACAAGGCTGTAAGGAAACTGTGGGAGTTAGATCTCGCGTACCTTGCCTGGACAGAGGTGTCGGTGCATCCCGATGCGCCAATGGACTGGAACGCTGCATTTGTTGCCGATAGAAACCTGGTATTCGGGATCGAAATGTTTAAAATCTTCGGTCAGGTACTGGACTTCTTGACAGTATGTGACATCTCCAACGCAGTATCAGACTGGAATCACATCTCAAGAACTCGTGTATCTCATGAAATGGATGCTTCTTCCTGCTTGACCAAATCAATGGCAGTCCTCCATCTCTAA 1683 43.85 MSKRLMRSMSQKLRRKNNKGVAEEEDISRGISLRCLTLYGRGGGCKVGADTGEEIGDPGSRRRSSASEEGKGYKSLFSTEENGVDCFSYGVKERFRKKHSPKHSGLRNSTRSSDVHIFLPDDILEMCLMRLPLSSLMNARLVCKKWRYLTSTRRFLQMRRECLYQTPWIFLFGAVKEGYCSGEIHALDVSLKKWHRIDADILKGRFVFSLASIQDDIYIVGGCSSLANFGKVDKSSFRTHKGVLVFSPLTNSWRKIASMKHARSMPILGTSEVNSEFSVVPSHHNRQDRRYLRSRAGGSLDVYEDPHRLSLRRQARNPLEDNDASMLSNRKSYKFSRQKSEQSRAKGHRRFVIIAIGGLGSWDEPIESGEIYDSSSNKWTEIQRLPVDFGVICSGVVCNGIFYVYSETDRLAGYDIERGFWIGIQTSPFPPRVHEYYPKIVSSNGRLFMLSVSWCEGDGQIGQRNKAVRKLWELDLAYLAWTEVSVHPDAPMDWNAAFVADRNLVFGIEMFKIFGQVLDFLTVCDISNAVSDWNHISRTRVSHEMDASSCLTKSMAVLHL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7965608 7967290 + CmoCh05G009890.1 Cmo05g00989 383124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00989 560 Pfam F-box domain 119 155 IPR001810 GO:0005515
Cmo05g00989 560 ProSiteProfiles F-box domain profile. 113 159 IPR001810 GO:0005515
Cmo05g00989 560 Gene3D - 156 303 IPR015915 GO:0005515
Cmo05g00989 560 Gene3D - 325 548 IPR015915 GO:0005515
Cmo05g00989 560 Pfam Kelch motif 207 263 - -
Cmo05g00989 560 SMART kelc_smart 216 273 IPR006652 GO:0005515
Cmo05g00989 560 SMART kelc_smart 352 400 IPR006652 GO:0005515
Cmo05g00989 560 Gene3D - 118 155 - -
Cmo05g00989 560 MobiDBLite consensus disorder prediction 1 23 - -
Cmo05g00989 560 SUPERFAMILY Kelch motif 167 507 IPR015915 GO:0005515
Cmo05g00989 560 PANTHER OS09G0555300 PROTEIN 1 560 - -
Cmo05g00989 560 MobiDBLite consensus disorder prediction 49 72 - -
Cmo05g00989 560 MobiDBLite consensus disorder prediction 55 69 - -
Cmo05g00989 560 SMART fbox_2 119 159 IPR001810 GO:0005515
Cmo05g00989 560 PANTHER OS09G0555300 PROTEIN 1 560 - -
Cmo05g00989 560 SUPERFAMILY F-box domain 118 181 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00989 - - - csv:101217599 1090.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00989 Cmo12g00622 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00989 Cmo-Chr5:7965608 Cmo13g00559 Cmo-Chr13:6398380 8.51E-16 dispersed
Cmo12g00622 Cmo-Chr12:3898186 Cmo05g00989 Cmo-Chr5:7965608 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g74 . . . . . . . . Cmo05g00989 Cmo12g00622 . . . Car12g00663 . . Cpe07g00596 Bhi04g01221 . . . . . . Cla08g00935 Cam08g1382 Cec08g0963 Cco08g1082 Clacu08g1089 . Cre08g0872 . . Cone17ag1463 Cone20ag0013 . . . Cme03g01334 . Blo18g00741 . Bda01g01565 Bpe02g01759 . Bma01g00698 . . . . Cma12g00686 Cma05g00969 Car05g00853 . Cpe11g00781 . . . . . . . . . . . . . . . Lsi08g00777 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007825 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00989 Cmo_Chr05 FPKM 18.388205 20.808624 14.862893 15.222039 15.669955 15.915605 13.345542 19.312925 17.9331 19.818079