Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00990 ATGGCTGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCTTTTCAGATGAGAGCGGTTTTTACGCGAGATTGCATATTGAGCCTATTTACGATTCGTTTTTGTGCCCTTTAACGAAGAAAGTAATGCGGGATCCTGTTACTATAGAAAGTGGGCAAACTTTTGAACGTGCGGCCATTGAGATGTGGTTCAACGAATGCAGGGAGAGTAGAAGGAAGCCAATCTGTCCAATGACACTAAAAGAATTAAGAACCACGGATCTGAATCCCAGTATTGCTCTGCGAAATACTATTGAAGAGTGGACTGCGAGGAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAAAGAAACATTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCGAGGCACATCGCACGAAATGCGGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAGAGTTCAGTTTAGAGCTTTGGAAACGCTTAAAATTGTGGTGCAAGAAGACAATGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCGCACGGTAGTAAAGTTCTTGCGTCATGAGCATTCGAAAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCACGTCCCAAGACTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCAAGCAGTAGATCTGAGAACATCACCACAGTTGAAAATGCCGAGAGAACATTAGAGAATCTGGAGACATGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGGCTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCCCCAGAAACTAAACATTCTATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAATGACGACAAACTCTTTGTGGCTCAGACCGTGGGGCCGTCGCTAATTAATATCATGAGGAGTGGTGATAAGCAGGCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATTTCGTCTTTTGAGGCTAGTGCACGAGTTTTGGTACAGCAAGGGATACTGCCACCTCTCGTTCGGGATCTTTTCGCAGTTGGTTCGAACCCACTTCCCATGAAACTAAAAGAAGTATCTGCTACAATTCTTGCCAATATTGTTAGCTCAGGAAGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACCACACTTGTCTCTGAAGCTACTATACATAGCCTGCTACAACTCATTAGCAATACCGGTCCAGCCATTGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACGAGTTCTCCTTCAACTATTTCGAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAATAATCAGCTTGGTTCAATTTATCGAGGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCGCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCTGAAAATACAGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTCTCCCGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCCACCTTAGAATTTTTCAACTCCGCCAAGGGGGGACTAGGGGAGGCCGATTTTTAACACCATTCCTCGAAGGCCTTGTTCGAATTCTTGCGAGGATTACGTTTATACTGGCTGATGAACCTGATGCTGTTGCATTTTGTCGCAACCGCGATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTTTAGAATCTAAAACTTTGACTCAGTTACCTACACTTCCAGAACCAGGATTTTGTGCCTCAATTTTCCCATGCTTCAGCTCACAACCGGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACATGTTCTTTGAAGGAAACTTTTTGTCTTTTGGAAGGTAATGCAGTCGACAAATTGGTAGCCCTTTTAGATCACGCAAGTGAGAAGGTCGTCGAGGCAGCACTTGCAGCACTATCTACTTTGTTGGATGATGGGGTTGACGTCGAGAAGGGCGTGAACATTTTACACAATGTAGATGGGGTTCAGCCTATATTTAACGTGTTGTTTGAAAACCGCTCAGAGAATCTGATGAGACGGGCAGTTTGGACAGCCGAGAGGCTGTTGCGCAACGACGACATCGCTATCGAATTCTCGAACAATCCAAACGTGAATACAGCACTTGTCGATGCCTTCCAGCATGGTGACTACAAAACAAGGCAAATCGCTGAGCGTGCCTTGAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTGAGATTCTAGCCTCTTTTAAGTATTTGGAGGTAGATATTGAATGTATAAAGTCTCCAGCTCTTTAG 2505 44.31 MAESWDGSYDDSGSFSDESGFYARLHIEPIYDSFLCPLTKKVMRDPVTIESGQTFERAAIEMWFNECRESRRKPICPMTLKELRTTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPEKETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRRVQFRALETLKIVVQEDNECKEMLAEGDTLRTVVKFLRHEHSKEKEEAVALLYELSTSQDLCEKIGSVNGAILILVGMSSSRSENITTVENAERTLENLETCENNIRQMAEYGRLRPLLTQILEGPPETKHSMAAHLGELVLNNDDKLFVAQTVGPSLINIMRSGDKQAKEAALKALNQISSFEASARVLVQQGILPPLVRDLFAVGSNPLPMKLKEVSATILANIVSSGSDFNSIPVEPNNQTTLVSEATIHSLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAIISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEGAFELVHLRIFQLRQGGTRGGRFLTPFLEGLVRILARITFILADEPDAVAFCRNRDLAALFIELLQSNGLDNVQMVSAMALENLSLESKTLTQLPTLPEPGFCASIFPCFSSQPVLTGLCPLHRGTCSLKETFCLLEGNAVDKLVALLDHASEKVVEAALAALSTLLDDGVDVEKGVNILHNVDGVQPIFNVLFENRSENLMRRAVWTAERLLRNDDIAIEFSNNPNVNTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPEILASFKYLEVDIECIKSPAL 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7970495 7981678 - CmoCh05G009900.1 Cmo05g00990 383125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00990 834 SMART arm_5 673 714 IPR000225 GO:0005515
Cmo05g00990 834 SMART arm_5 448 488 IPR000225 GO:0005515
Cmo05g00990 834 SMART arm_5 347 392 IPR000225 GO:0005515
Cmo05g00990 834 SMART arm_5 139 179 IPR000225 GO:0005515
Cmo05g00990 834 SMART arm_5 266 306 IPR000225 GO:0005515
Cmo05g00990 834 SMART arm_5 181 221 IPR000225 GO:0005515
Cmo05g00990 834 SMART arm_5 307 346 IPR000225 GO:0005515
Cmo05g00990 834 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 812 - -
Cmo05g00990 834 SUPERFAMILY ARM repeat 134 445 IPR016024 -
Cmo05g00990 834 SUPERFAMILY ARM repeat 451 809 IPR016024 -
Cmo05g00990 834 CDD RING-Ubox_PUB 34 79 IPR045210 -
Cmo05g00990 834 Pfam Armadillo/beta-catenin-like repeat 685 712 IPR000225 GO:0005515
Cmo05g00990 834 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Cmo05g00990 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 116 IPR013083 -
Cmo05g00990 834 SUPERFAMILY RING/U-box 24 111 - -
Cmo05g00990 834 Gene3D - 575 815 IPR011989 -
Cmo05g00990 834 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Cmo05g00990 834 Coils Coil 253 273 - -
Cmo05g00990 834 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 812 - -
Cmo05g00990 834 Gene3D - 118 537 IPR011989 -
Cmo05g00990 834 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01421 Cmo-Chr4:7230940 Cmo05g00990 Cmo-Chr5:7970495 4.45E-29 dispersed
Cmo05g00990 Cmo-Chr5:7970495 Cmo18g01102 Cmo-Chr18:11469594 5.06E-127 dispersed
Cmo05g00990 Cmo-Chr5:7970495 Cmo18g00882 Cmo-Chr18:10087319 4.70E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00990 - - bhj:120075341 1409.82