Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00994 ATGGGTTGCTTTTCTTGTATTAATCCTCGTACTAAAGATGGAAGCAGGGTGGAAATTGATAGTTCTGTTCGATTTGAATCACGGAATTCTGTTAATTCCTCAGGTTCGAAGGGGAAAGAAGATCGGGTCATCACTGAAAGCTGTTCGAAGGGGGGCGTAGCTGCTCGAAGTTTCACGTTTCGTGAACTCGCCACAGCTACGAGAGGTTTCAAGGAAGTGAATTTGCTTGGAGAGGGTGGTTTTGGACGCGTCTATAAAGGACGTTTGGAGTCGGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGCCTTCAAGGCTTTCAGGAGTTCATTGTGGAGGTTCTCATGTTGAGCCTGTTGCACCATGCCAATCTTGTCACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTCTATGAGTACATGCCTATGGGAAGCCTGGAAGGTCATCTTTTTGATTTGAGTTCTGACAAAAAGCCACTGAGTTGGAATACAAGGATCAAGATTGCAGTCGCTGCTGCCCGAGGCCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATACCGTGACTTGAAGTCGGCTAATATCTTATTGGACAATGATTTCAATCCTAAGCTTTCAGATTTCGGGCTAGCTAAATTGGGACCTGTTGGTGACAATACTCACGTTTCGACGAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGCGGCAAATTAACCCTTAAATCCGATATTTACAGCTTTGGTGTGGTTATGCTCGAGCTTATTACGGGGCGCAGGGTTATTGATTCTAAAAGGAAACCAGGGGAACAGAACCTAGTTGTTTGGTCCCGTCCTTTACTTAAGGATCGCAGAAAGTTCGTGCAATTAGTCGATCCCCTGTTGGAAGGACACTTCCCACTTCGTTGTTTGCAACACGCCGTTGCGATTACTGCAATGTGTCTTCAGGAACAGCCGTCGTTTCGCCCTCTTATTAGTGATATTGTTGTAGCTCTCGAGTATTTGGTTTCTCAGAGTTATTTACAAGAACTACGCCATGTTAAGATTCTTGGTTCATCACAATTATCACCTTCACAACATAATGAAGACATCAATGCCCAAGAATCAGGGATTCCCTGA 1152 44.7 MGCFSCINPRTKDGSRVEIDSSVRFESRNSVNSSGSKGKEDRVITESCSKGGVAARSFTFRELATATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHANLVTLIGYCTDGDQRLLVYEYMPMGSLEGHLFDLSSDKKPLSWNTRIKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVMLELITGRRVIDSKRKPGEQNLVVWSRPLLKDRRKFVQLVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLVSQSYLQELRHVKILGSSQLSPSQHNEDINAQESGIP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8007821 8010918 + CmoCh05G009940.1 Cmo05g00994 383129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00994 383 SMART serkin_6 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00994 383 PANTHER OS07G0668900 PROTEIN 26 361 - -
Cmo05g00994 383 Gene3D Transferase(Phosphotransferase) domain 1 146 361 - -
Cmo05g00994 383 ProSiteProfiles Protein kinase domain profile. 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00994 383 Gene3D Phosphorylase Kinase; domain 1 42 145 - -
Cmo05g00994 383 PANTHER OS07G0668900 PROTEIN 26 361 - -
Cmo05g00994 383 Pfam Protein kinase domain 71 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00994 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cmo05g00994 383 SUPERFAMILY Protein kinase-like (PK-like) 55 344 IPR011009 -
Cmo05g00994 383 CDD STKc_IRAK 76 344 - -
Cmo05g00994 383 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02074 Cmo05g00994 CCT
Cmo05g00994 Cmo09g00054 CCT
Cmo05g00994 Cmo09g00054 ECH
Cmo01g02074 Cmo05g00994 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00994 Cmo-Chr5:8007821 Cmo09g00054 Cmo-Chr9:219005 0 dispersed
Cmo01g02074 Cmo-Chr1:14456723 Cmo05g00994 Cmo-Chr5:8007821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74359 PF00069 Pkinase 2.90E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00994 - - csv:101217131 639.032