Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00994 | ATGGGTTGCTTTTCTTGTATTAATCCTCGTACTAAAGATGGAAGCAGGGTGGAAATTGATAGTTCTGTTCGATTTGAATCACGGAATTCTGTTAATTCCTCAGGTTCGAAGGGGAAAGAAGATCGGGTCATCACTGAAAGCTGTTCGAAGGGGGGCGTAGCTGCTCGAAGTTTCACGTTTCGTGAACTCGCCACAGCTACGAGAGGTTTCAAGGAAGTGAATTTGCTTGGAGAGGGTGGTTTTGGACGCGTCTATAAAGGACGTTTGGAGTCGGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGCCTTCAAGGCTTTCAGGAGTTCATTGTGGAGGTTCTCATGTTGAGCCTGTTGCACCATGCCAATCTTGTCACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTCTATGAGTACATGCCTATGGGAAGCCTGGAAGGTCATCTTTTTGATTTGAGTTCTGACAAAAAGCCACTGAGTTGGAATACAAGGATCAAGATTGCAGTCGCTGCTGCCCGAGGCCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATACCGTGACTTGAAGTCGGCTAATATCTTATTGGACAATGATTTCAATCCTAAGCTTTCAGATTTCGGGCTAGCTAAATTGGGACCTGTTGGTGACAATACTCACGTTTCGACGAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGCGGCAAATTAACCCTTAAATCCGATATTTACAGCTTTGGTGTGGTTATGCTCGAGCTTATTACGGGGCGCAGGGTTATTGATTCTAAAAGGAAACCAGGGGAACAGAACCTAGTTGTTTGGTCCCGTCCTTTACTTAAGGATCGCAGAAAGTTCGTGCAATTAGTCGATCCCCTGTTGGAAGGACACTTCCCACTTCGTTGTTTGCAACACGCCGTTGCGATTACTGCAATGTGTCTTCAGGAACAGCCGTCGTTTCGCCCTCTTATTAGTGATATTGTTGTAGCTCTCGAGTATTTGGTTTCTCAGAGTTATTTACAAGAACTACGCCATGTTAAGATTCTTGGTTCATCACAATTATCACCTTCACAACATAATGAAGACATCAATGCCCAAGAATCAGGGATTCCCTGA | 1152 | 44.7 | MGCFSCINPRTKDGSRVEIDSSVRFESRNSVNSSGSKGKEDRVITESCSKGGVAARSFTFRELATATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHANLVTLIGYCTDGDQRLLVYEYMPMGSLEGHLFDLSSDKKPLSWNTRIKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVMLELITGRRVIDSKRKPGEQNLVVWSRPLLKDRRKFVQLVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLVSQSYLQELRHVKILGSSQLSPSQHNEDINAQESGIP | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8007821 | 8010918 | + | CmoCh05G009940.1 | Cmo05g00994 | 383129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00994 | 383 | SMART | serkin_6 | 70 | 346 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g00994 | 383 | PANTHER | OS07G0668900 PROTEIN | 26 | 361 | - | - | |
Cmo05g00994 | 383 | Gene3D | Transferase(Phosphotransferase) domain 1 | 146 | 361 | - | - | |
Cmo05g00994 | 383 | ProSiteProfiles | Protein kinase domain profile. | 70 | 346 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g00994 | 383 | Gene3D | Phosphorylase Kinase; domain 1 | 42 | 145 | - | - | |
Cmo05g00994 | 383 | PANTHER | OS07G0668900 PROTEIN | 26 | 361 | - | - | |
Cmo05g00994 | 383 | Pfam | Protein kinase domain | 71 | 339 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g00994 | 383 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 192 | 204 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo05g00994 | 383 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 344 | IPR011009 | - | |
Cmo05g00994 | 383 | CDD | STKc_IRAK | 76 | 344 | - | - | |
Cmo05g00994 | 383 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 98 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02074 | Cmo05g00994 | CCT | |
Cmo05g00994 | Cmo09g00054 | CCT | |
Cmo05g00994 | Cmo09g00054 | ECH | |
Cmo01g02074 | Cmo05g00994 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00994 | Cmo-Chr5:8007821 | Cmo09g00054 | Cmo-Chr9:219005 | 0 | dispersed | |
Cmo01g02074 | Cmo-Chr1:14456723 | Cmo05g00994 | Cmo-Chr5:8007821 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74359 | PF00069 | Pkinase | 2.90E-47 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00994 | - | - | csv:101217131 | 639.032 |