Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00995 ATGGGCAACCTCTGCGGCACTCCCGTCGACGCCCACTCCCTCCCTCCGACCAAGCCTTCCTCTCCCGGCCACCTCACATCTACTCCACGCGCCTCCTCCACGCCGCTCGATCTTAAAGTTTACACTCTCTCGGAGCTGAAGACGGCCACCAAGAATTTTCGCCCCGACACGCTGCTCGGAGAGGGCGGATTTGGGCGGGTCTTCAAAGGCTGGGTCGATAGGGACACCTACGCGCCGTCTAAGGTCGGCGTTGGCATCCCTGTCGCCGTTAAAAAGTCAAATCCCGACAGCTCTCAGGGCCTCCGGGAATGGAAGGCTGAGGTGGAATTCTTGGGGAAATTTACCCATCCAAATGTCGTCAAATTAATCGGCTATTGCTGGGAAGACAAGCACTTTCTACTTATTTATGAGTACATGGAGAGGGGTAGTTTGGAGAATCATTTATTTCGAAAAGGTGTACAGCCACCGTCATGGGAAACGCGGATTAAAATAGCGGTGGGGGCGGCGCGTGGATTGACGTTCCTCCATACGTCGGAGAAGAGCGTGATTTACCGCGACTTCAAAGCGGCTAATATTCTCCTGGACTGGGATTTTAACCCAAAATTGTCGGATTTTGGGCTGGCGAAACTGGGCCCATCGAATGGTTACTCCCACGTCAGCACGGATCCAGTGGGCACCTGCGGCTACGCTGCCCCTGAGTACATTGCTAGTGGACATTTGTACATTAAAAGCGACGTGTACGGGTTCGGAGTGGTGCTCCTCGAGCTCCTGACCGGAATGCGGGCAGTGGACCCAAACCGACCAAGTAAGTCTCACAACTTGGTGAAGTGGGCCAAGCCATCACTGAGCAACAAGAAGAAGATGACGAAACTAATGGACCCAAGACTTGGGGACGACTACTCGCCCGGAGGAGCCTGGGGCACAGCTGAACTCATTTTAAAATGTTTGAAAATGGACCCCAGAGATCGGCCCTCCATGGAAGAGGTTTTGGTGACCCTTGAAGAAATCAGTACCTTTACAGACAGGCCCAAGAAGAAGCCCAAATCAAGAGCTAGGAAGCCCAGGCCTTAA 1071 53.59 MGNLCGTPVDAHSLPPTKPSSPGHLTSTPRASSTPLDLKVYTLSELKTATKNFRPDTLLGEGGFGRVFKGWVDRDTYAPSKVGVGIPVAVKKSNPDSSQGLREWKAEVEFLGKFTHPNVVKLIGYCWEDKHFLLIYEYMERGSLENHLFRKGVQPPSWETRIKIAVGAARGLTFLHTSEKSVIYRDFKAANILLDWDFNPKLSDFGLAKLGPSNGYSHVSTDPVGTCGYAAPEYIASGHLYIKSDVYGFGVVLLELLTGMRAVDPNRPSKSHNLVKWAKPSLSNKKKMTKLMDPRLGDDYSPGGAWGTAELILKCLKMDPRDRPSMEEVLVTLEEISTFTDRPKKKPKSRARKPRP 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8014224 8016815 + CmoCh05G009950.1 Cmo05g00995 383130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00995 356 MobiDBLite consensus disorder prediction 1 32 - -
Cmo05g00995 356 ProSiteProfiles Protein kinase domain profile. 53 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00995 356 ProSitePatterns Protein kinases ATP-binding region signature. 59 92 IPR017441 GO:0005524
Cmo05g00995 356 Pfam Protein tyrosine and serine/threonine kinase 57 331 IPR001245 GO:0004672|GO:0006468
Cmo05g00995 356 MobiDBLite consensus disorder prediction 337 356 - -
Cmo05g00995 356 SUPERFAMILY Protein kinase-like (PK-like) 29 334 IPR011009 -
Cmo05g00995 356 PANTHER OS01G0588500 PROTEIN-RELATED 30 350 - -
Cmo05g00995 356 Gene3D Transferase(Phosphotransferase) domain 1 139 352 - -
Cmo05g00995 356 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
Cmo05g00995 356 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 30 350 - -
Cmo05g00995 356 CDD STKc_IRAK 59 336 - -
Cmo05g00995 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00995 - - - cpep:111805209 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00995 Cmo-Chr5:8014224 Cmo16g01331 Cmo-Chr16:9419813 3.91E-144 dispersed
Cmo18g00637 Cmo-Chr18:8068405 Cmo05g00995 Cmo-Chr5:8014224 3.12E-29 transposed
Cmo12g00617 Cmo-Chr12:3853610 Cmo05g00995 Cmo-Chr5:8014224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74360 PF07714 PK_Tyr_Ser-Thr 7.40E-45 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00995 Cmo_Chr05 FPKM 498.398956 548.894104 647.390686 672.258057 149.317612 107.232262 141.476059 1193.83667 1274.739868 1230.568848