Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01003 ATGGGTCGCTCTCTCTGTTCTCTCTTTCCCCTGTTCTGGATCTTCTTCTGCTTCTTCACATGTTTCAATTGTCTTCTCGTTACTGCTGAGGATCCTGACGGCAATAGATTAACTCCAATCAATCGCGATCTTTATCATTCTAGTGTTGATTTGATGAAGGAGATAAAAGCTTTGGTCCATCGACACCCTGATAAGCTGACTATAGAGACTATGGAGGCTAGAAATAAGGGCTATTTTGCAGAAATTCCAGTTGTTACATATTGCCATGGAAGGAATAAAGTTAATGACATGTCAAAATTCCGGATACTTCTTAGTTTTGGACAGCATGGAAGGGAGCTCATAACAACAGAACTTGCACTGAGAATTCTTTTAATCTTGAGTGAAGAACAGTTGCTGCCCCACATGGATCGAGCTTCCTTAAGCAACACACTTGACAAGCTTGTCATTAAGGTGGTGCCAATGGAAAACTTAAACGGGCGCAGGCTCGTCGAGGACAGGGATCTATGTGAAAGAAGAAATGGGAGAGGTGTTGATTTGAACAGGAATTGGAGCGTCGATTGGGGTAAAAAGGAGAAGGATTATAATCCTTACGAGGAAAATCCTGGATTTGCACCTTTCAGCGAACCAGAAACTCAAATGATGCGAAAACTTGCCTTAACATTTGATCCACATATATGGGTCAATGTGCATTCAGGCATGGAGGCTTTGTTCATGCCTTATGACCATAAGAACACAACTCCTGATGGCCAAATTGCTCAACAAATGAAACTTCTGCTTCAAGAACTCAACAATCTCCATTGCCACCAGCGCTGCATGATTGGATCGGGCGGAGGTTCGGTCGGCAAACAAGCAGATTATAACAATTTATACTTGAGGTATCTGGCACATGGGACAGCCACAGATTTCATGTTTGACAAAGCAAGAATTCCCATGGCTTTCACTTTTGAGATATATGGATACGAAGCTGCCTCACCAAAAGACTGCTTTAGAATGTTCAATCCCACAGATCCCACTACCTTCAATAGGGTTCTCGGCGACTGGTCTGCTGCGTTTTTTACAATTTTTAAGCTCGGTCCGGAGTACCTTGACAAGACCGAGCTCCGTTCAAGGGACAACTTAGACAGGCTGGTGTCGATTGATGATTATCTTGAAGGTTACTTGATTGAGAGGAGTAGCAGATATGGGAAGAAGAGGGAGGTGTTTGAGCTAGGGATGCAAGAAATGAGAACTTATTTTAGGCTATTTTTGTTGTCGTCAGTTTTATTGATGTTCATGTTTTGTTCCAGACTTTCTAAGAACAAGTTTAGACCACTTGTTTCTGCTATTTCCCTTTGA 1335 42.4 MGRSLCSLFPLFWIFFCFFTCFNCLLVTAEDPDGNRLTPINRDLYHSSVDLMKEIKALVHRHPDKLTIETMEARNKGYFAEIPVVTYCHGRNKVNDMSKFRILLSFGQHGRELITTELALRILLILSEEQLLPHMDRASLSNTLDKLVIKVVPMENLNGRRLVEDRDLCERRNGRGVDLNRNWSVDWGKKEKDYNPYEENPGFAPFSEPETQMMRKLALTFDPHIWVNVHSGMEALFMPYDHKNTTPDGQIAQQMKLLLQELNNLHCHQRCMIGSGGGSVGKQADYNNLYLRYLAHGTATDFMFDKARIPMAFTFEIYGYEAASPKDCFRMFNPTDPTTFNRVLGDWSAAFFTIFKLGPEYLDKTELRSRDNLDRLVSIDDYLEGYLIERSSRYGKKREVFELGMQEMRTYFRLFLLSSVLLMFMFCSRLSKNKFRPLVSAISL 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8067574 8072471 + CmoCh05G010030.1 Cmo05g01003 383138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01003 444 PANTHER PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B 26 443 - -
Cmo05g01003 444 SUPERFAMILY Zn-dependent exopeptidases 42 356 - -
Cmo05g01003 444 Gene3D Zn peptidases 43 334 - -
Cmo05g01003 444 PANTHER OS02G0119300 PROTEIN 26 443 - -
Cmo05g01003 444 CDD M14-CPA-like 99 332 IPR034269 -
Cmo05g01003 444 Pfam Zinc carboxypeptidase 99 321 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo05g01003 444 SMART zn_carb 45 338 IPR000834 GO:0004181|GO:0006508|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01003 - - - cmos:111450510 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00613 Cmo-Chr12:3832831 Cmo05g01003 Cmo-Chr5:8067574 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g104 . . . . . . . . Cmo05g01003 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1448 . . . . . . . Bda08g01170 . . . . . . . . . Cma05g00985 Car05g00865 . . . . . . . . . . . . . . . . . Lsi08g00546 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008631 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g01003 Cmo_Chr05 FPKM 69.361633 69.303627 26.069851 28.554319 4.60031 4.067289 4.63958 31.074476 34.217216 30.70764