Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01007 ATGGTGTCTGTCGCTTCCGCCATGCAAGGTGGTTCATCCGGCATCGGCTACGGGCTGAAATACCAGGCTCGGTGCATCGCCGATGTCATAGCAGATACTGATCATACCAGTTTCATCACAGGCACTCTCAGTCTCAAAGACGAAAATGAGGTGCATTTGATTCGGATTTCATCGAGTGGATCCGAGCTTATATGCGAAGGTTTGTTTTCTCACCCCAATGAGATCTGGGACCTGGCGTCTTGCCCCTTCGATCAGCGCATTTTCTCTACCGTCTTCTCCACTGGTGAAAACTTTGGGGCAGCCATATGGCAAATCCCTGAGTTATATGGTGAATTGAATTCTCCTCAGTTGGAACGGGTTACATCCCTTGATGAGCATGCTAGTAAGATCAATTGCGTTCTTTGGTGGCCATCTGGAAGACATGATAAGCTGATCAGCATTGACGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAGATTGCTCAGGTACAATCGAAGGAGTCAGCTGGGCTGCTTCATTATTTGTCTGGAGGAACGTGGGATCCACATGATTCAAATGCCATTGCAGCAACTAGTGAATCATCCGTTCAATTTTGGGATTTAAGGACAATGAAGAAGTCAGACTCGATTGCATGCTCTGCGTATGTTCGCAACGTGGATTACAACCCCAAAAAGAAACATTTGCTTGTAACTGCTGAGGATGAAACTGGAATATCTATCTGGGACCTTAGAAAGCCAAAAGTCCCGATCCAACAACTTCCTGGGCATACCCACTGGACATGTGCTGTTCGTTGTAATCCTGAATTTGAAGGGCTAATCTTGAGTGCCGGTACTGATTCGGCTGTCAACTTATGGTTGGCATCCATGACTGATGGCGAACTAAAATCTGAAAGGACGATTGATTCACCACGATGTCCAGCTGATCCATTACTGCATTCTTACAGTGACTACGAAGACAGTGTTTATGGCCTTGCTTGGAGCTCTCGTGAGCCTTGGATCTTTGCATCACTGTCCTATGATGGGAGGGTCGTTGTAGAATCAGTGAAGCCTTTTCTCTCGAGATAA 1074 46.0 MVSVASAMQGGSSGIGYGLKYQARCIADVIADTDHTSFITGTLSLKDENEVHLIRISSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKIAQVQSKESAGLLHYLSGGTWDPHDSNAIAATSESSVQFWDLRTMKKSDSIACSAYVRNVDYNPKKKHLLVTAEDETGISIWDLRKPKVPIQQLPGHTHWTCAVRCNPEFEGLILSAGTDSAVNLWLASMTDGELKSERTIDSPRCPADPLLHSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8096091 8101602 - CmoCh05G010070.1 Cmo05g01007 383142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01007 357 PANTHER WD-REPEAT PROTEIN 8 357 IPR040323 -
Cmo05g01007 357 SUPERFAMILY WD40 repeat-like 29 348 IPR036322 GO:0005515
Cmo05g01007 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 288 IPR001680 GO:0005515
Cmo05g01007 357 SMART WD40_4 62 104 IPR001680 GO:0005515
Cmo05g01007 357 SMART WD40_4 116 156 IPR001680 GO:0005515
Cmo05g01007 357 SMART WD40_4 206 245 IPR001680 GO:0005515
Cmo05g01007 357 SMART WD40_4 249 289 IPR001680 GO:0005515
Cmo05g01007 357 SMART WD40_4 168 203 IPR001680 GO:0005515
Cmo05g01007 357 SMART WD40_4 310 350 IPR001680 GO:0005515
Cmo05g01007 357 PANTHER WD REPEAT-CONTAINING PROTEIN DWA2 8 357 - -
Cmo05g01007 357 Gene3D - 26 348 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01007 K23289 EIPR1, TSSC1; EARP and GARP complex-interacting protein 1 - csv:101214013 686.411
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g01007 Cmo12g00610 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01007 Cmo-Chr5:8096091 Cmo19g00748 Cmo-Chr19:7648484 3.57E-14 dispersed
Cmo12g00610 Cmo-Chr12:3815204 Cmo05g01007 Cmo-Chr5:8096091 1.18E-76 transposed
Cmo12g00608 Cmo-Chr12:3800034 Cmo05g01007 Cmo-Chr5:8096091 2.11E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g118 . . . . . . . . Cmo05g01007 Cmo12g00610 . . . Car12g00652 Sed08g1827 . . Bhi04g01562 Tan02g1534 Cmetu03g1317 . Hepe08g1487 . Lcy13g2251 Cla08g00960 . . . . . . . . Cone17ag1444 Cone20ag0033 . . . Cme03g01354 . Blo18g00750 . Bda01g01558 Bpe02g01753 . Bma01g00705 . . . . Cma12g00672 Cma05g00989 Car05g00870 . Cpe11g00798 . . . . . . . . . . . . . . . Lsi08g00800 . Chy03g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006013 1 1 1 1 1 1 3 1 1 1 2 1 2 1 1 3 1 2 1 1 1 1 2 1 1 2 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g01007 Cmo_Chr05 FPKM 0.0 0.0 0.0 0.149377 0.0 0.0 0.149159 0.122066 0.103447 0.10392