Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01018 ATGGAAGATAACTCCTCGGCTGCAACTGGACTTCACTCTATCCGCTGCAGAGCTGCTGTCTGCCGGAAGCCTGGGGAGCCGCTAGTGATTGAGGAGATAATTGTGGCGCCGCCTATGGCTCATGAAGTTCGGATTCGGATAATATGTACCTCTTTGTGTCACAGCGATCTCACGTTCTGGAAGATGAAGGATTTTCCAGGGATTGTTCCTAGAATTCTTGGCCACGAGGCAATCGGAGTGGTTGAGAGTGTAGGAAAGGATGTGAATGAAGTTAAGAAAGGAGATACAGTAATCCCAACATTCATGGCTGACTGTGGGGACTGTAAAGATTGCTTATCAAATAAGAGCAATCTATGTTCAAAATTGCCTTTCAGTGTGTCTCCCGGAATGCCCCGATGTGGGACAAGCAGATTCACAGATCTCAATGGAGAGGTTATTCATCATTTTCTGTTTGTATCAAGTTTCACTGAATACACTGTGGTAGATGTCGCCAATGTAACCAAAGTAGATCCTGCAATCCCTCCAAACAGGGCATGCCTTCTTAGTTGTGGGGTAACAACAGGGGTTGGTGCGGCATGGAGAACAGCAAATGTAGAGAAGGGATCCACTGTCGCCATATTTGGACTAGGGTCCATAGGTTTAGCTGTTGCGGAAGGAGCAAGAATATGTGGAGCAAGCAGGATTATTGGTATAGATGTCAACCCAGATAAATTTGAAACTGCGAAGAAGTTTGGAGTCACTGAGTTTGTTAATACCAGAAGTCTTGGGGATAAATGTGTGAGCCAGGTGATTATTGAAATGACTGGTGGAGGTGCAGACTATTGCTTTGAATGCGTTGGAATGGCTTCCTTAGTTCAAGAAGCATTCACATGCTGTAGACAGGGTTGGGGTAAAACAATCGTGGTGGGAGTGGACAAGCCTGGATCACTATTGAATCTTAGCTCTTACGAAGTCCTTCATCGTGGGAAGACTATCATGGGATCCTTGTTCGGGGGAACAAAGCCCAAATCAGATATTCTCACCCTCCTTAACTGGTACACTGATAAGAAACTTGAGCTGGATAAATTTGTGACCCACGAAGTAGGTTTTGAAGATATCAACGAAGCTTTTAATCTCCTAATTGAAGGAAAGTCCTTGAAATCTGTGATTTGGATGAACAATTGA 1164 44.59 MEDNSSAATGLHSIRCRAAVCRKPGEPLVIEEIIVAPPMAHEVRIRIICTSLCHSDLTFWKMKDFPGIVPRILGHEAIGVVESVGKDVNEVKKGDTVIPTFMADCGDCKDCLSNKSNLCSKLPFSVSPGMPRCGTSRFTDLNGEVIHHFLFVSSFTEYTVVDVANVTKVDPAIPPNRACLLSCGVTTGVGAAWRTANVEKGSTVAIFGLGSIGLAVAEGARICGASRIIGIDVNPDKFETAKKFGVTEFVNTRSLGDKCVSQVIIEMTGGGADYCFECVGMASLVQEAFTCCRQGWGKTIVVGVDKPGSLLNLSSYEVLHRGKTIMGSLFGGTKPKSDILTLLNWYTDKKLELDKFVTHEVGFEDINEAFNLLIEGKSLKSVIWMNN 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8197154 8201482 + CmoCh05G010180.1 Cmo05g01018 383153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01018 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Cmo05g01018 387 Pfam Zinc-binding dehydrogenase 212 345 IPR013149 -
Cmo05g01018 387 Gene3D - 188 328 - -
Cmo05g01018 387 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 11 384 - -
Cmo05g01018 387 SUPERFAMILY GroES-like 12 196 IPR011032 -
Cmo05g01018 387 PANTHER ALCOHOL DEHYDROGENASE 11 384 - -
Cmo05g01018 387 Gene3D - 19 380 - -
Cmo05g01018 387 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Cmo05g01018 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Cmo05g01018 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01018 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101206456 703.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01015 Cmo-Chr5:8171550 Cmo05g01018 Cmo-Chr5:8197154 0 dispersed
Cmo05g01016 Cmo-Chr5:8189654 Cmo05g01018 Cmo-Chr5:8197154 3.37E-136 dispersed
Cmo05g01018 Cmo-Chr5:8197154 Cmo08g00048 Cmo-Chr8:260141 1.02E-127 dispersed
Cmo07g01419 Cmo-Chr7:8155922 Cmo05g01018 Cmo-Chr5:8197154 2.93E-13 dispersed
Cmo15g01385 Cmo-Chr15:9428590 Cmo05g01018 Cmo-Chr5:8197154 4.95E-110 dispersed
Cmo05g01017 Cmo-Chr5:8194156 Cmo05g01018 Cmo-Chr5:8197154 2.06E-29 tandem
Cmo05g01018 Cmo-Chr5:8197154 Cmo05g01019 Cmo-Chr5:8202602 1.85E-13 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g01018 Cmo_Chr05 FPKM 40.52663 42.972214 20.915243 20.678892 39.923904 43.415062 37.943043 35.578907 35.854946 33.865585