Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01050 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGCGGTTTTAATATAGATGGATTTAACCGTGCAGTCAACGGAAATGATAAGTCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCAATAGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGATGAAGATCTTCGACCCTCAAGACAAATTGCTCTTGTTTTTCAATAAACTTTTTGTCATATCATGTTTTTTGGCAATATCTGTGGACCCCCTGTTCTTTTATGTTCCTGTTATTAATGGAAACTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTGTCCACATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTACACAAATTGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCCGATGTATATGTGACAAAACAAGCCCTTCTTTTAATTGTATTCCTACAGTATATCCCAAGATTTCTTAGAGCGGTACCATTGACTTCGGAATTGAAAAGGACAACAGGTGTATTTGCTGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTAAGGCCCCGATTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGGCATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTGGATGGCATTAAGTCAAGTTGCAAACCTGCTGATGATAATGATCTGTTTGATTTTGGAATCTTTAAACAGGCTCTGTCCTCTGGTATTGCCGCATCTAAGAGTTTTATCGTTAAATATTGTTACTGTCTGTGGTGGGGGCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATTGCATTAGCTGTACTTGGTCTCATCCTCTTTGCTCTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACCATAAGACTTGAGGAGATGAGGGTGAAAAAGCGTGATTCGGAGCAGTGGATGCACCACCGCTTGCTGCCACAGGAGCTTCGGGAGAGAGTCAGGCGTTACGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTTTACCCAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAAAGGCTGCTTGATGCTATTTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACCACGGATGGCGGGCGGAGTGGATTTTTCAACCGTACCTTTTTGAAAGAAGGTGATTTTTGTGGTGAGGAGCTTTTGACCTGGGCTCTAGACCCGAAATCTGGTTCGAATCTTCCTACTTCTACAAGGACAGTAAAGGCTATTACAGAGGTTGAGGCTTTCGCCCTTGTTGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTACAACATACCTTCCGATTTTACTCGCAGCAATGGAGGACCTGGGCAGCTTGCTTCATCCAAGCAGCGTGGCGTCGGTATTCCAAGAGAAAGTCTTTAGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAAGGAGCTCAAACTACTACGAGCGGAGGATCTTATAGTATTCGTGCAACGTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGTGGCGTTCAGCGATATCGGAACGCGAAAAGCGCTCAGGAATTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2205 43.85 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVNGNDKSSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKMKIFDPQDKLLLFFNKLFVISCFLAISVDPLFFYVPVINGNSNCLGIDRKLAITVTTLRTIIDVFYLVHMALQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRAVPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCKAPICRKDFLYCGNQGMEGYATWNQTGVDGIKSSCKPADDNDLFDFGIFKQALSSGIAASKSFIVKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPTSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSLELRQKEEVAAEESEGAQTTTSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8475255 8486933 + CmoCh05G010500.1 Cmo05g01050 383185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01050 734 Gene3D Helix hairpin bin 433 496 - -
Cmo05g01050 734 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Cmo05g01050 734 SMART cnmp_10 505 636 IPR000595 -
Cmo05g01050 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo05g01050 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo05g01050 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo05g01050 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo05g01050 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo05g01050 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo05g01050 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Cmo05g01050 734 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo05g01050 734 SUPERFAMILY cAMP-binding domain-like 435 625 IPR018490 -
Cmo05g01050 734 Pfam Cyclic nucleotide-binding domain 530 615 IPR000595 -
Cmo05g01050 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 731 - -
Cmo05g01050 734 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 731 - -
Cmo05g01050 734 Gene3D Jelly Rolls 503 623 IPR014710 -
Cmo05g01050 734 CDD CAP_ED 505 636 IPR000595 -
Cmo05g01050 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Cmo05g01050 734 Gene3D - 108 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01137 Cmo-Chr2:6889071 Cmo05g01050 Cmo-Chr5:8475255 0 dispersed
Cmo05g01050 Cmo-Chr5:8475255 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo06g01044 Cmo-Chr6:8113022 Cmo05g01050 Cmo-Chr5:8475255 0 dispersed
Cmo14g02168 Cmo-Chr14:15560949 Cmo05g01050 Cmo-Chr5:8475255 0 dispersed
Cmo04g02924 Cmo-Chr4:20720536 Cmo05g01050 Cmo-Chr5:8475255 3.44E-134 transposed
Cmo11g01074 Cmo-Chr11:6008422 Cmo05g01050 Cmo-Chr5:8475255 0 transposed
Cmo12g00862 Cmo-Chr12:7836426 Cmo05g01050 Cmo-Chr5:8475255 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01050 K05391 - csv:101219180 1358.97