Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g01068 | ATGTACGAGATGGGGAATGATCTAAACCAAGAGCTATCAAAGACAACAAGCATACTTGGTCTAAAGGTATGGGAAGTCATTGGAATTGGAGTAGGACTATTCATAATCTCAATCCTTTGCATACTCTCATTCTTTTTAACCTCAAGCAACAAGAACTCAAGAACATCATCATCAGCAGCCAACGCCAACACCAACACCTTATGTCCTCTAACACAAATCCCATCACATTCAAAGGACATAAAGGCAGTTCATATCACCACTTACAGCACTGAATCAGGATCATCATTTCCTCCATTGAGCTATGGCTATGGATCACAATCAGGGGATGAAGGCAGCTCTGGCACCGTCACGACGACGACAATGAACCGACGTTCGACGTCGCCACTGTCGGGTCTGCTAGAGATGTCGCGATTGGGATGGGGGTATTGGTTTACATTGAGGGAGCTGGATTTGGCTACTAATTTGTTCTCAGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTATAAAGGGAGGTTGTTGAATGGGATATCAGTGGCTGTTAAGAAGATTTTTAATGGACAAGGCCAAGCTGAGATGGAATTTAGAGTGGAAGTTGAGGCAATTGGGCATGTTAGGCATAAGAATCTTGTTCGTCTTTTGGGGTACTGCATCGAAGGGACTGATCGGATGCTGGTGTATGAGTACATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATAGATACCTTACATGGGAGGCTCGAATGAAGATCATGTTGGGGACAGCCAAAGGGCTTGCATACTTGCACGAAGCCATTGAGCCAAAGGTGGTGCATCGAGACATCAAAGCTAGCAACATACTAATAGATGAAAACTTCAATGCCAAAGTATCCGACTTCGGGTTGGCAAAGTTGATGGAGGTCGGAAAGACTCATGTTACGACTCGAGTTATGGGGACATTTGGGTATGTGGCTCCCGAGTATGCGAATACTGGACTTTTGAATGAGAAGAGCGATGTGTATAGCTTTGGAGTTGTATTGGTGGAAACAATCACAGGAAGAGATCCTGTTGACTATGGACGTCCGCCCAAACAGGTAAACGTGGTGGATTGGCTGAAAATGATGATCGGAAGTAAACGATGTGAAGAAGTGGTGGATCCAAAAATAGGGATCGAAGGAAGGCCATCCACAAGAGGGTTGAAAAGAGTTCTATTGGTTGCATTGAGGTGTGTGGATCCAGATTACGAGAAGAGACCAAAGATGAGCCAAGTTGTTCGGATGCTCGAATCTCAAGATAGTTCTTCTCATACACGTTCAAAACAGTAG | 1329 | 44.39 | MYEMGNDLNQELSKTTSILGLKVWEVIGIGVGLFIISILCILSFFLTSSNKNSRTSSSAANANTNTLCPLTQIPSHSKDIKAVHITTYSTESGSSFPPLSYGYGSQSGDEGSSGTVTTTTMNRRSTSPLSGLLEMSRLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVYKGRLLNGISVAVKKIFNGQGQAEMEFRVEVEAIGHVRHKNLVRLLGYCIEGTDRMLVYEYINNGSLELWLHEGMGENRYLTWEARMKIMLGTAKGLAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMEVGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSKRCEEVVDPKIGIEGRPSTRGLKRVLLVALRCVDPDYEKRPKMSQVVRMLESQDSSSHTRSKQ | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8613152 | 8616256 | + | CmoCh05G010680.1 | Cmo05g01068 | 383203 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g01068 | 442 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 278 | 290 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo05g01068 | 442 | PANTHER | OS01G0323000 PROTEIN | 8 | 437 | - | - | |
Cmo05g01068 | 442 | PANTHER | OS01G0323000 PROTEIN | 8 | 437 | - | - | |
Cmo05g01068 | 442 | ProSitePatterns | Protein kinases ATP-binding region signature. | 162 | 185 | IPR017441 | GO:0005524 | |
Cmo05g01068 | 442 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 442 | - | - | |
Cmo05g01068 | 442 | ProSiteProfiles | Protein kinase domain profile. | 156 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01068 | 442 | CDD | STKc_IRAK | 162 | 430 | - | - | |
Cmo05g01068 | 442 | SUPERFAMILY | Protein kinase-like (PK-like) | 132 | 430 | IPR011009 | - | |
Cmo05g01068 | 442 | SMART | serkin_6 | 156 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01068 | 442 | Gene3D | Phosphorylase Kinase; domain 1 | 119 | 231 | - | - | |
Cmo05g01068 | 442 | Pfam | Protein kinase domain | 157 | 426 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01068 | Cmo-Chr5:8613152 | Cmo19g01111 | Cmo-Chr19:9447468 | 0 | dispersed | |
Cmo17g00387 | Cmo-Chr17:2404272 | Cmo05g01068 | Cmo-Chr5:8613152 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74362 | PF00069 | Pkinase | 1.80E-47 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g01068 | - | - | cmo:103493978 | 684.485 |