Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01068 ATGTACGAGATGGGGAATGATCTAAACCAAGAGCTATCAAAGACAACAAGCATACTTGGTCTAAAGGTATGGGAAGTCATTGGAATTGGAGTAGGACTATTCATAATCTCAATCCTTTGCATACTCTCATTCTTTTTAACCTCAAGCAACAAGAACTCAAGAACATCATCATCAGCAGCCAACGCCAACACCAACACCTTATGTCCTCTAACACAAATCCCATCACATTCAAAGGACATAAAGGCAGTTCATATCACCACTTACAGCACTGAATCAGGATCATCATTTCCTCCATTGAGCTATGGCTATGGATCACAATCAGGGGATGAAGGCAGCTCTGGCACCGTCACGACGACGACAATGAACCGACGTTCGACGTCGCCACTGTCGGGTCTGCTAGAGATGTCGCGATTGGGATGGGGGTATTGGTTTACATTGAGGGAGCTGGATTTGGCTACTAATTTGTTCTCAGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTATAAAGGGAGGTTGTTGAATGGGATATCAGTGGCTGTTAAGAAGATTTTTAATGGACAAGGCCAAGCTGAGATGGAATTTAGAGTGGAAGTTGAGGCAATTGGGCATGTTAGGCATAAGAATCTTGTTCGTCTTTTGGGGTACTGCATCGAAGGGACTGATCGGATGCTGGTGTATGAGTACATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATAGATACCTTACATGGGAGGCTCGAATGAAGATCATGTTGGGGACAGCCAAAGGGCTTGCATACTTGCACGAAGCCATTGAGCCAAAGGTGGTGCATCGAGACATCAAAGCTAGCAACATACTAATAGATGAAAACTTCAATGCCAAAGTATCCGACTTCGGGTTGGCAAAGTTGATGGAGGTCGGAAAGACTCATGTTACGACTCGAGTTATGGGGACATTTGGGTATGTGGCTCCCGAGTATGCGAATACTGGACTTTTGAATGAGAAGAGCGATGTGTATAGCTTTGGAGTTGTATTGGTGGAAACAATCACAGGAAGAGATCCTGTTGACTATGGACGTCCGCCCAAACAGGTAAACGTGGTGGATTGGCTGAAAATGATGATCGGAAGTAAACGATGTGAAGAAGTGGTGGATCCAAAAATAGGGATCGAAGGAAGGCCATCCACAAGAGGGTTGAAAAGAGTTCTATTGGTTGCATTGAGGTGTGTGGATCCAGATTACGAGAAGAGACCAAAGATGAGCCAAGTTGTTCGGATGCTCGAATCTCAAGATAGTTCTTCTCATACACGTTCAAAACAGTAG 1329 44.39 MYEMGNDLNQELSKTTSILGLKVWEVIGIGVGLFIISILCILSFFLTSSNKNSRTSSSAANANTNTLCPLTQIPSHSKDIKAVHITTYSTESGSSFPPLSYGYGSQSGDEGSSGTVTTTTMNRRSTSPLSGLLEMSRLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVYKGRLLNGISVAVKKIFNGQGQAEMEFRVEVEAIGHVRHKNLVRLLGYCIEGTDRMLVYEYINNGSLELWLHEGMGENRYLTWEARMKIMLGTAKGLAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMEVGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSKRCEEVVDPKIGIEGRPSTRGLKRVLLVALRCVDPDYEKRPKMSQVVRMLESQDSSSHTRSKQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8613152 8616256 + CmoCh05G010680.1 Cmo05g01068 383203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01068 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Cmo05g01068 442 PANTHER OS01G0323000 PROTEIN 8 437 - -
Cmo05g01068 442 PANTHER OS01G0323000 PROTEIN 8 437 - -
Cmo05g01068 442 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Cmo05g01068 442 Gene3D Transferase(Phosphotransferase) domain 1 232 442 - -
Cmo05g01068 442 ProSiteProfiles Protein kinase domain profile. 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01068 442 CDD STKc_IRAK 162 430 - -
Cmo05g01068 442 SUPERFAMILY Protein kinase-like (PK-like) 132 430 IPR011009 -
Cmo05g01068 442 SMART serkin_6 156 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01068 442 Gene3D Phosphorylase Kinase; domain 1 119 231 - -
Cmo05g01068 442 Pfam Protein kinase domain 157 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01068 Cmo-Chr5:8613152 Cmo19g01111 Cmo-Chr19:9447468 0 dispersed
Cmo17g00387 Cmo-Chr17:2404272 Cmo05g01068 Cmo-Chr5:8613152 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74362 PF00069 Pkinase 1.80E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01068 - - cmo:103493978 684.485